PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G25550.1
Common NameLOC102716558
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 897aa    MW: 99478.5 Da    PI: 6.1892
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G25550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23132233199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  OB12G25550.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNDNNQ 225
                   99*****************************9777666.49************************************************..777777 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+++++r+
  OB12G25550.1 226 LLLGIRRA 233
                   8***9997 PP
2Auxin_resp118.74.6e-39258341183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++++sdld+vrWpnS+Wrs+k
  OB12G25550.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITSISDLDSVRWPNSHWRSVK 341
                   79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-47117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41123247IPR015300DNA-binding pseudobarrel domain
CDDcd100178.30E-22131232No hitNo description
PfamPF023625.0E-22132233IPR003340B3 DNA binding domain
SMARTSM010195.7E-25132234IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548132234IPR003340B3 DNA binding domain
PfamPF065073.0E-34258341IPR010525Auxin response factor
SuperFamilySSF542773.01E-6760838No hitNo description
PfamPF023092.7E-7761850IPR033389AUX/IAA domain
PROSITE profilePS5174522.845764848IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MKLSPSAAPD TLQALPENDG EQRCLNSELW HACAGPLVSL PMVRSRVVYF PQGHSEQVAA  60
STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSLQPPAQ ELIARDLHEN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSHWRSV KVGWDESTTG DKQPRVSLWE  360
IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYPSLMWLR DGNRGAQTLN  420
FQGHGISPWL QPRIDSPLLG VKTDTYQQMA AAALEEIRSG DNLKQPSATL QYQQTQNLNG  480
GLNSLFASHV LQQMHYQTPQ SPLQAVQQGH CQNTGDSGFV QGQLTQLQLL KEQEFQQQQQ  540
QQRQQILQEQ SHHEMPQQLP SSDPRIADVA SESGSATQAP SSLLNGSSFY HQNLLEGNRN  600
PSLQLHNNFH NFSSQEASDI LSLPPSSQLM ASNGWPSKQL AVESIVHPEA QPMLPKIEKV  660
NHHTSISHFP GTFPSQSARG CSVVQDCGAD ADNRLLSSSF ELQDGMTSII SDASRETDTM  720
AIPLLRYNGA DLTTENTLAT SNCLGESGTF NHLNNVCVNP SQGATFVKVY KSGSLGRSLD  780
ISRFSSYCEL RSELEHLFGL EGQLEDPVRS GWQLVFVDRE NDILLVGDDP WQEFANSVWC  840
IKILSPQEVQ KLVRGGDGLL SSPGARIQQS NACDDYSASH NMQNIPGNIA SVAPLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-163436229388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G25550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1217030.0AK121703.1 Oryza sativa Japonica Group cDNA clone:J033074F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698719.10.0PREDICTED: auxin response factor 25
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLJ3NEZ70.0J3NEZ7_ORYBR; Auxin response factor
STRINGOB12G25550.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]