PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G25520.1
Common NameLOC102700105
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 297aa    MW: 32152.3 Da    PI: 9.2177
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G25520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
     OB12G25520.1  5 KQKWTAEEESALKAGIAKHGAGKWRTILKDPDfsnvlRYRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.732161IPR017930Myb domain
SuperFamilySSF466891.72E-15266IPR009057Homeodomain-like
SMARTSM007179.4E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-13556IPR009057Homeodomain-like
PfamPF002497.6E-8556IPR001005SANT/Myb domain
CDDcd116604.43E-20657No hitNo description
SuperFamilySSF467851.36E-15115195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.3E-11116181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.123118186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.0E-14118188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.7E-8123179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGAPKQKWTA EEESALKAGI AKHGAGKWRT ILKDPDFSNV LRYRSNVDLK DKWRNMNVTV  60
NASGARDRVK APVVKKPRSA PKHEGHSTST AINAVTSDGD DDIAEAAPLG TFSSSKRSLS  120
RLDNIIVEAV RSLNEPTGSY KTAIANYIEE QYWPPADFDH VLSSKLNDLT ASGKLIKVNR  180
KYRIAPSSSL SEGRSTKVVL LEDIQKEPTK FDREDVPILT KSQVDAELAR MRSMTAEEAA  240
AAAARAVAEA EAIMAEAEAA VREAEAAEAD AVAAQAFAEA AMATFKNRSS AKLIIRA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G25520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1006180.0AK100618.1 Oryza sativa Japonica Group cDNA clone:J023108E10, full insert sequence.
GenBankAK1056600.0AK105660.1 Oryza sativa Japonica Group cDNA clone:001-200-G11, full insert sequence.
GenBankFJ9402110.0FJ940211.1 Oryza sativa Japonica Group clone KCS061C09 Myb-like DNA binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664198.10.0PREDICTED: single myb histone 6
RefseqXP_006664199.10.0PREDICTED: single myb histone 6
RefseqXP_006664200.10.0PREDICTED: single myb histone 6
RefseqXP_015698817.10.0PREDICTED: single myb histone 6
SwissprotC0HIA31e-108SMH6_MAIZE; Single myb histone 6
TrEMBLJ3NEZ40.0J3NEZ4_ORYBR; Uncharacterized protein
STRINGOB12G25520.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-65telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]