PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G25170.1
Common NameLOC102719255
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 330aa    MW: 35967.8 Da    PI: 9.1785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G25170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52111391128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lppGfrFhP+d+el+++yL++kv+gk  ++  +  + +vd++kvePwdLp+ ++ + kewyfFs rd+kyatg+r+nrat sgyWkatgkd+ v + 
  OB12G25170.1  11 LPPGFRFHPRDDELICDYLAPKVAGKVgFSGRRPpMVDVDLNKVEPWDLPAVASIGGKEWYFFSLRDRKYATGQRTNRATVSGYWKATGKDRVVAR- 106
                   79************************986665656***************8888899***********************************9999. PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +g+lvg++ktLvfy+grapkg+kt+Wvmheyr+
  OB12G25170.1 107 RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRM 139
                   999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-593164IPR003441NAC domain
PROSITE profilePS5100555.80411164IPR003441NAC domain
PfamPF023652.1E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSFLSMVEAE LPPGFRFHPR DDELICDYLA PKVAGKVGFS GRRPPMVDVD LNKVEPWDLP  60
AVASIGGKEW YFFSLRDRKY ATGQRTNRAT VSGYWKATGK DRVVARRGAL VGMRKTLVFY  120
QGRAPKGRKT EWVMHEYRME GVHDQQPSNF SSKEDWVLCR VICKRKSGGG ASSKSRNLPN  180
IVHDSSTPTS SPPLPPLMDT TLAQLQASMN TTNTSSATAV AVAAALEQVP CFSSFSNNNI  240
ASNSNGNNNS NSATVAQPCY LPIVTGNNGM SYLDHGLPEF GSFLDTQSCD KKILKAVLSQ  300
LNSIGGEVLP SLPPPAEMAA AVTSSWMNHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-50616712168NO APICAL MERISTEM PROTEIN
1ut4_B4e-50616712168NO APICAL MERISTEM PROTEIN
1ut7_A4e-50616712168NO APICAL MERISTEM PROTEIN
1ut7_B4e-50616712168NO APICAL MERISTEM PROTEIN
4dul_A4e-50616712168NAC domain-containing protein 19
4dul_B4e-50616712168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G25170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714640.0AK071464.1 Oryza sativa Japonica Group cDNA clone:J023097O13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664181.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE63e-88NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLJ3NEV90.0J3NEV9_ORYBR; Uncharacterized protein
STRINGOB12G25170.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-77NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]