PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24940.1
Common NameLOC102709334
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 761aa    MW: 82546.6 Da    PI: 7.7332
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.49.3e-16456495241
           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                   ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk +
  OB12G24940.1 456 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 495
                   689**********************************976 PP
2TCR50.63.7e-16540578139
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                   ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  OB12G24940.1 540 RHKRGCNCKKSSCLKKYCECYQGGVGCSVTCRCEGCKNA 578
                   589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.1E-15455496IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.887456580IPR005172CRC domain
PfamPF036388.1E-12458493IPR005172CRC domain
SMARTSM011144.9E-17540581IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-11542578IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MRIDLARLLL WDAAKWRACD SPVFNFINSL SPIPPPKPSD SAHNVQLFKS SDLAPVSSIF  60
ASPHVNPAKE SKLLIRDDSV HLSRESHSPN SVRTRIGATS SIRMIRCKNI VSENCSITCY  120
LNESNSNKSS QSIQLCSDSA ESDKDQNTDG KKDPTREQDH TDLEFVLLDQ SGPEKMDSLH  180
SGNNACENQL SEQHKDELGS FDGGYMIAHQ SNSDMLRLTP PFESETHLVN ETLGADNVYC  240
ESLLTDGSSG SYIQNSAPDP HLYWAGTVEG SATDYTPQMI PGACQSQLLP NDQIGNKLNE  300
PSDYMPLDQN VSSQNLRGMR RRCLFNEKAG AANKGVKNTS VRHSSNLTTP RRRTSSSDNN  360
LKTLRTPPCA LPGIGLHLNA LAAVPKDKTA LRNDTEFSLN QASNAPSAVG SSPPTADPHT  420
VNDDSSQTAV VAYVDECSQG SPKKKRHKFD NGDSTSCKRC SCKKSKCLKL YCECFHAGVF  480
CSEPCSCQGC LNKPSNMETV LSTREQIESR NPLAFAPKVI RTEPGQEIAD DSNKTPASAR  540
HKRGCNCKKS SCLKKYCECY QGGVGCSVTC RCEGCKNAFG RREGVSILSM EEAKRGSEDK  600
NGGVKEETID NDKQLVIYQD TTNLTPPESV LTTPLVVDCR PLVPLPPLSS KKPRSSTKLG  660
GYSSRLEGPL KSDILLSPFE SYAEMMLGDG TSNTLKGESS PQTSVKVVSP NKKRVSPPRI  720
GTGLSPICKS GRKLILKSIP SFPSLGGDLT NVDPNASSLA P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1646057714120Protein lin-54 homolog
5fd3_B1e-1646057714120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739420.0AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664723.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLJ3NET60.0J3NET6_ORYBR; Uncharacterized protein
STRINGOB12G24940.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-80TESMIN/TSO1-like CXC 2