PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB12G24920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 240aa MW: 27221.9 Da PI: 6.867 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.5 | 3.4e-15 | 6 | 41 | 4 | 39 |
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN OB12G24920.1 6 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 41 79*********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 17.102 | 1 | 43 | IPR005172 | CRC domain |
SMART | SM01114 | 1.6E-12 | 3 | 44 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.2E-11 | 6 | 40 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEFVRRKCTC KKSGCLKKYC DCYQGGAGCS INCKCDDCKN PYGRKVGVIL DGTKNILAGP 60 TPIERNGAEA DSSDDEEDDY YMNRPLSPVS PSPVSRESSF QQETLVGVEV QTMNGHLYPK 120 PLTQVRPESW QITRRPAEEV RGEAWRYLRR PSEDGTSDVM EGHADPKFQR DNKPPENHVH 180 VDRYSIPRCI EVMNAMADLS PIEKSLAPDI FLDASNREIF LSLTVDIRTM WLKRKMKSLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB12G24920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU406718 | 0.0 | CU406718.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103K09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015698357.1 | 1e-180 | PREDICTED: protein tesmin/TSO1-like CXC 2, partial | ||||
TrEMBL | J3NET4 | 1e-180 | J3NET4_ORYBR; Uncharacterized protein | ||||
STRING | OB12G24920.1 | 1e-180 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9610 | 28 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-18 | TESMIN/TSO1-like CXC 2 |