PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB12G24740.1

Common Name

LOC102707086

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 295aa MW: 31308.4 Da PI: 5.2571

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB12G24740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.1	1.2e-15	121	177	4	60
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r+ +NRe+ArrsR+RK+a + Le v eL +eN L+k+l +++++++ + OB12G24740.1 121 AKRTKRMLSNRESARRSRKRKQAHLNDLESQVSELRSENACLQKRLADMTQKYKQST 177 79*****************************************77777776666554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-16	118	182	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.6E-13	120	175	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.737	120	183	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-12	120	175	No hit	No description
SuperFamily	SSF57959	1.05E-11	122	173	No hit	No description
CDD	cd14702	2.69E-18	123	173	No hit	No description
PROSITE pattern	PS00036	0	125	140	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.5E-12	189	233	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MKGGAGDGAA EVNCAGGGGG GDPGAYAAVL KSKLDLYCAA VAKSMEAKLE ESSLGYLNSQ 60 ASDTSQLVSQ ASFNGYGSTI ATNSNAIHDN DDQGKPANSA TSKEHSDDDG DLEENTNPAN 120 AKRTKRMLSN RESARRSRKR KQAHLNDLES QVSELRSENA CLQKRLADMT QKYKQSTTET 180 SNLRADVNTM RRKVNIAEEA VRRVTGRSLL LFTTSETPAS STPFSSGLSD AASALVEDDW 240 ANSSLPDEAI PVSCPAMASM RCVASLENLQ KRIRADSEAA STLSVPEAAA SDKQY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	140	RRSRKRK
2	134	141	RRSRKRKQ
3	136	141	SRKRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB12G24740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU405694	0.0	CU405694.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113M07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664716.1	0.0	PREDICTED: light-inducible protein CPRF2-like
TrEMBL	J3NER6	0.0	J3NER6_ORYBR; Uncharacterized protein
STRING	OB12G24740.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7595	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	5e-30	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	102707086