PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G23780.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 544aa    MW: 60940.3 Da    PI: 7.924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G23780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.7e-06278299223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   +C+ C+k+Fs++ +L+ H+r+H
  OB12G23780.1 278 QCQMCSKVFSSSNSLRGHMRMH 299
                   7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.06E-5215240No hitNo description
PfamPF139121.4E-10217241IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806217246IPR007087Zinc finger, C2H2
SMARTSM003550.084217239IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218239IPR007087Zinc finger, C2H2
PROSITE profilePS5015713.277277304IPR007087Zinc finger, C2H2
SMARTSM003556.8E-4277299IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.13E-9278299No hitNo description
PfamPF139123.0E-5278299IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-7278303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280279299IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-9478505No hitNo description
PROSITE profilePS501579.951483505IPR007087Zinc finger, C2H2
PfamPF139121.0E-9483506IPR007087Zinc finger, C2H2
SMARTSM003550.44483505IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280485505IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MDIFFYECKE VLKIQKFRRM VSYAGFYCFT TLLTYAYTSN TTRAGISRGD QFYASYPAGT  60
ELLTDTAKLY KAALGNCFEI DDWGPLEFSI MAKHFDRQGK PPYAYHAQYM AHLLSHGQLD  120
GTSSKLQQQQ LSSYVCNVHR ISSLATVDSD SDFPYSKSQN VFPPECDRVV VFPEQSSGVP  180
PVLLPLLLAD WKDKYQEASS ITSDDTDMAP RGRPRKYCCS KCNKSFRSGN ALGGHMSCHW  240
RIGNQPKSTS SPPAAVDLRL PLLRPCNDKP SLLSLETQCQ MCSKVFSSSN SLRGHMRMHG  300
GEKVVAMPEE EAAGLIEALA ISDSMQNLMV FSSVKRKRSL RSKRQTPEFS LEEIDAADAL  360
LLLSERFHKM SAYEDCYLGD KDDSSLRSIV LTEVNTNVLD HSLVRSVDSK VPINDSNSAY  420
ANCYGQSDKE NCLVPIVPKK EMDLNDFDHE LVGDAALRKP RINSSDEEMK FGDLSVALKE  480
KSHRCITCGK SFGSGQALGG HKRCHYVWKC DRPRGFAGRP DSVVLKERKL KLEPQLWCGT  540
SNLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G23780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664675.10.0PREDICTED: zinc finger protein 595-like
TrEMBLJ3NEH00.0J3NEH0_ORYBR; Uncharacterized protein
STRINGOB12G23780.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.12e-08zinc-finger protein 3