PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB12G23750.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 537aa MW: 59958.4 Da PI: 5.3969

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB12G23750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	78	95	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 C+ Cgk F+rksn H OB12G23750.1 78 FCQFCGKGFKRKSNWSEH 95 6*************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MAAEAGASRW GGRPCLLRLP RVVANKSPIG TKERVYHRGH RCSGLQDFAS PDEADRLPSW 60 LESPAHSEMA SDGPQWHFCQ FCGKGFKRKS NWSEHEPLCK NKPDAQGGTD ILNFHVPRRK 120 RSALPEQHVM KADRPPEEET DVLDALLLLK EQPAYPGETE FSDDEPAAND LSQVLTACSD 180 DRSSSVDCYG GDERRVNVHP NVVVETDDLS RNVGSRGVTN SVDDSDVIQK QKRKPDLSIA 240 DCRDLVEMQR QNMKADINIP GHKDSSAMQM QNETKTVKDG ADINVPEHRV SSVMQMQNEK 300 LDLSLLRHNN SSDNEVSTLS DSPMDDSNAL VPTDTNLNKE TKTVDIYIPE HIVSSVMQMQ 360 NEKPGLDLLP HNNSSDKEES TLSSSSMNYC STLVPTDINS DKETKTVSGD QNAADVMGTF 420 VVRYYRRRKK QLQNDQEAST VMHLQNEKPG LDLLPHNNSS HKEESTLSDS SVNDRNAADV 480 RDTFVVRYYR RRKKQLQNDQ EASTATWPAT VPPGLSSESQ NLFESAWITS RLKGLGC

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MAAEAGASRW GGRPCLLRLP RVVANKSPIG TKERVYHRGH RCSGLQDFAS PDEADRLPSW  60
LESPAHSEMA SDGPQWHFCQ FCGKGFKRKS NWSEHEPLCK NKPDAQGGTD ILNFHVPRRK  120
RSALPEQHVM KADRPPEEET DVLDALLLLK EQPAYPGETE FSDDEPAAND LSQVLTACSD  180
DRSSSVDCYG GDERRVNVHP NVVVETDDLS RNVGSRGVTN SVDDSDVIQK QKRKPDLSIA  240
DCRDLVEMQR QNMKADINIP GHKDSSAMQM QNETKTVKDG ADINVPEHRV SSVMQMQNEK  300
LDLSLLRHNN SSDNEVSTLS DSPMDDSNAL VPTDTNLNKE TKTVDIYIPE HIVSSVMQMQ  360
NEKPGLDLLP HNNSSDKEES TLSSSSMNYC STLVPTDINS DKETKTVSGD QNAADVMGTF  420
VVRYYRRRKK QLQNDQEAST VMHLQNEKPG LDLLPHNNSS HKEESTLSDS SVNDRNAADV  480
RDTFVVRYYR RRKKQLQNDQ EASTATWPAT VPPGLSSESQ NLFESAWITS RLKGLGC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB12G23750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015698773.1	0.0	PREDICTED: uncharacterized protein LOC102717487 isoform X1
TrEMBL	J3NEG7	0.0	J3NEG7_ORYBR; Uncharacterized protein
STRING	OB12G23750.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15758	11	11