PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB12G23080.1 | ||||||||
Common Name | LOC102701128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27632.4 Da PI: 7.9499 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 8.8e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl OB12G23080.1 10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ OB12G23080.1 63 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.259 | 5 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 9 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.32E-11 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.552 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 63 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.56E-12 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 65 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGRMSPHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKSNMS 120 PSSSSSSLTY QSCHPETPSM ILGVDEQEHH GGSGCITSIM KGAPADMDGY PMDQIWMEIE 180 APNVLAGPCF DEGKEDAYNS VSGPLLPTPM WDYCCPETCL TMDDEIKVAS KYGYGKGVGP 240 CY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 7 | 112 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 5e-27 | 7 | 112 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-27 | 7 | 112 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-27 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-27 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB12G23080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT833282 | 0.0 | CT833282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664115.1 | 0.0 | PREDICTED: myb-related protein MYBAS2 isoform X1 | ||||
Swissprot | Q4JL76 | 1e-155 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | J3NEA0 | 0.0 | J3NEA0_ORYBR; Uncharacterized protein | ||||
STRING | OB12G23080.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-70 | myb domain protein 59 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102701128 |
Publications ? help Back to Top | |||
---|---|---|---|
|