PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G21380.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 378aa    MW: 40786 Da    PI: 6.8608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G21380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-085332048
                     TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48
                     G g+W+ +ar  g+ R++k+c++rw +yl
     OB12G21380.1  5 GQGSWSDVARNAGLQRCGKSCRLRWINYL 33
                     7789***********************97 PP
2Myb_DNA-binding51.72e-163982146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+++++E++l+v++++ lG++ W+ Ia++++ gRt++++k++w++
     OB12G21380.1 39 RGAFSPQEEDLIVNLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 82
                     89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.001133IPR017930Myb domain
CDDcd001670.00244533No hitNo description
Gene3DG3DSA:1.10.10.603.9E-14540IPR009057Homeodomain-like
PfamPF002493.4E-6533IPR001005SANT/Myb domain
SuperFamilySSF466896.27E-211993IPR009057Homeodomain-like
PROSITE profilePS5129424.9713488IPR017930Myb domain
SMARTSM007171.3E-153886IPR001005SANT/Myb domain
PfamPF002496.6E-153982IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-254188IPR009057Homeodomain-like
CDDcd001673.09E-114181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MLRSGQGSWS DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEDLI VNLHAILGNR  60
WSQIAARLPG RTDNEIKNFW NSTIKKRLKI TSSSSASASP ATTECASPPE HKLGAVVDAV  120
VVGGGGTTAG QQLDVTAAAM KSMWVDSSAA XXXXXXXXXX XXXXXXXAVG RSYGGQLLPL  180
PDQVCGVADT PPPFFHAHHS VSTPFKHGSH SHHALFHGGY YGSSGHHGIA MDGSFIGGGG  240
GGDHSNILFS AVSPLLDYPS IEAAAAEDHT MININNNPKT GSISISSNTT AETAATLSSN  300
ITDNNSNGNS NIRNSNNNMS SSISLMNSSN MVYWDEGHHH HHQQQQQQHM SRNVMGEWDL  360
EELMKDVSSL PFLDFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2238824108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G21380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340841e-156JN634084.1 Oryza sativa Japonica Group secondary wall MYB46 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698316.10.0PREDICTED: uncharacterized protein LOC102715909
TrEMBLJ3NDT00.0J3NDT0_ORYBR; Uncharacterized protein
STRINGOB12G21380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-55myb domain protein 46