PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB12G20750.1 | ||||||||
Common Name | LOC102702617 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 601aa MW: 67804.1 Da PI: 5.1125 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 569 | 588 | 3 | 22 |
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg++F ++ L +H+ OB12G20750.1 569 CETCGRTFDSRNKLFSHLEE 588 *****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46565 | 5.63E-20 | 7 | 113 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 4.7E-19 | 7 | 77 | IPR001623 | DnaJ domain |
SMART | SM00271 | 1.4E-15 | 9 | 70 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 16.447 | 10 | 78 | IPR001623 | DnaJ domain |
CDD | cd06257 | 1.03E-13 | 10 | 67 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 1.1E-15 | 11 | 75 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.8E-9 | 12 | 30 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.8E-9 | 30 | 45 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.8E-9 | 50 | 70 | IPR001623 | DnaJ domain |
SuperFamily | SSF57667 | 1.28E-12 | 295 | 344 | No hit | No description |
SMART | SM00451 | 4.7E-5 | 299 | 333 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 7.3 | 302 | 326 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 1.7E-10 | 302 | 327 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 304 | 326 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.93 | 567 | 596 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.6 | 567 | 591 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 569 | 591 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MASAAAPKRC YYEVLGLPLD CSPTDIKLAF RRLALALHPD KQPPGSDTAA ATAALPELQH 60 AHSVLSDPQE RAYYDSHRSQ ILFTDTSSGG ARGASASPVP DLFSFFSASV FSGFSDSGRG 120 FYKVYGDVFD RVLAQELAYA RRMGMPADSV ATPPVIGNLD SPYAQATAFY NYWLGFGTVM 180 DFGWAAEWDA ARGENRRVRR LMEEDNKKAM RKARREYNDA VRGLAAFCKK RDKRMVDMAL 240 KRKAEEEKKK AEEMARKKEE ERRKKERVMA YQEPEWARVE EDEAGFEEDE EEEMKAKRKD 300 ELYCVACNKK FKSDKQWKNH EQSKKHRDKV AELRMVFEEE EEALKEAEEE LEEVDVGFDF 360 KPAQESEESD FSDAAEELAE ELSEGLEVRD EESDDVNMDN AEQKVGSYDE TSVLEEMLSR 420 RKNQNSGFVP LQEEASPRGA MGDGDEADTS YEINNVKKKG RRRRAAKKGQ GEGTCADNGQ 480 GMKSVIQPEE SRHDNDENGV DDKMEGPSSN EENASASKED QLKGKTGNTK KNKKNKKGTE 540 KSTAIPAEQK DTLKGKKQRE VSKAPSNDCE TCGRTFDSRN KLFSHLEETG HAMLKTRQKN 600 R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 247 | 264 | KKKAEEMARKKEEERRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB12G20750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109540 | 0.0 | AK109540.1 Oryza sativa Japonica Group cDNA clone:002-119-G10, full insert sequence. | |||
GenBank | AK242914 | 0.0 | AK242914.1 Oryza sativa Japonica Group cDNA, clone: J090083H23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664045.1 | 0.0 | PREDICTED: DNAJ protein JJJ1 homolog | ||||
TrEMBL | J3NDL7 | 0.0 | J3NDL7_ORYBR; Uncharacterized protein | ||||
STRING | OB12G20750.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8433 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 1e-105 | DNAJ heat shock N-terminal domain-containing protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102702617 |