PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G20240.1
Common NameLOC102719633
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 441aa    MW: 47291.7 Da    PI: 8.688
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G20240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.5e-23129173145
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                   d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  OB12G20240.1 129 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 173
                   689***************************************986 PP
2QLQ53.85.9e-195894137
           QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                  ++FT++Q+++L++Q+l+yK+++ n+PvP+ Ll++i++
  OB12G20240.1 58 GPFTPTQWMELEHQALIYKHIVVNAPVPAGLLLPIRR 94
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-105894IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.6325994IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-135993IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.527129173IPR014977WRC domain
PfamPF088799.7E-20131172IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAMATSTNGS FLLGSGGYPG AQMLSFSSSS SGHSGNAGLN CGSSDVTSMQ EVLARVRGPF  60
TPTQWMELEH QALIYKHIVV NAPVPAGLLL PIRRSLHPPV LPHFSSGGIL GSSSLGWGSF  120
QLGYSGSADS EPGRCRRTDG KKWRCSRDAV VDQKYCERHI NRGRHRSRKH VEGQTSHAMK  180
ATVAIAQPLM GASNGKSSGS HGVSHELTKS LGTNLTDTSP KQFNRMLLDK ANRTEDFQDC  240
ANQQRKPSIL ENTKGDNLSE EMSSQEDYAV IPAGALMNTP QSENVNLTPQ QQRCKKSQPN  300
LIHHLFGRGI QHDDIQLSIS IPVDNSNLST NHNKAQVTHV VGSSSSEGNV ARASWVPDSW  360
ETSIGGPLGE FFTNTSNAPD NKSKSRQHPP SLNILADGHT TSPQLQSPTG VLQMTNFSSV  420
PSSTVSSPGS LSAMACSLQA W
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G20240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2415570.0AK241557.1 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698579.10.0PREDICTED: growth-regulating factor 7-like
SwissprotQ6AWY20.0GRF7_ORYSJ; Growth-regulating factor 7
TrEMBLJ3NDG60.0J3NDG6_ORYBR; Uncharacterized protein
STRINGOB12G20240.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-46growth-regulating factor 2