PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB12G19870.1 | ||||||||
Common Name | LOC102723008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 118aa MW: 12806.4 Da PI: 7.4455 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 48.6 | 2.6e-15 | 12 | 84 | 1 | 66 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.p.k.....kvkaeekewyfFskrdk 66 lppGfrF+Ptdeelvv+yL++++ +++l+ + i++v+++ ++P+dL p + +v+a+ + + fF+++d OB12G19870.1 12 LPPGFRFRPTDEELVVHYLRRRALDTPLPPAIDIPDVRLLAHDPSDLlPpAvrgggAVTAGVRFIDFFARADA 84 79*************************999777*************963234444433334444456666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-16 | 8 | 65 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.843 | 12 | 118 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-8 | 13 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MEAKECAARR ALPPGFRFRP TDEELVVHYL RRRALDTPLP PAIDIPDVRL LAHDPSDLLP 60 PAVRGGGAVT AGVRFIDFFA RADARGRRPA SPVSSSCVTD ASAEHCREQE TTSRGASD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB12G19870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 4e-49 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664550.1 | 1e-78 | PREDICTED: NAC domain-containing protein 68 | ||||
TrEMBL | J3NDC9 | 2e-77 | J3NDC9_ORYBR; Uncharacterized protein | ||||
STRING | OB12G19870.1 | 4e-78 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 8e-14 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Entrez Gene | 102723008 |