PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G16010.1
Common NameLOC102711490
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 692aa    MW: 78682.3 Da    PI: 6.3749
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G16010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.54.6e-2386175289
          FAR1   2 fYneYAkevGFsvrkskskksk.rngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                   fY+eYA+++GF  r+ +s++sk  ++ +++++fvCs+eg  ++++    + +++r+r++ r gC+a+++v +e +++w+v+kle+ HnH l
  OB12G16010.1  86 FYHEYARRLGFPFRVGRSRRSKgVEEVVIMKRFVCSREGVYKKKQPPsgEATSKRERMSMREGCNAMMEVVRE-KDHWVVSKLEKAHNHCL 175
                   9********************61567789**********9888776666789999****************99.9**************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2086175IPR004330FAR1 DNA binding domain
PfamPF105511.9E-29268359IPR018289MULE transposase domain
PROSITE profilePS5096611.016547583IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-8550579IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011558585IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MMMEGARTEG DELIADYVDC LMSLDSRPGQ NDSLILEGAP PDVEAVSLNA VAEQDVMREF  60
APADADDPNE PVLGMTFESD EAAKMFYHEY ARRLGFPFRV GRSRRSKGVE EVVIMKRFVC  120
SREGVYKKKQ PPSGEATSKR ERMSMREGCN AMMEVVREKD HWVVSKLEKA HNHCLGLGTR  180
VGYLRARGLP DASDKVTAMV SDGMTSLRQN ILGEGGDGQG ILDYLKKMQA NDPGCTHAIQ  240
VDKNGCLMNV FWADSRAKAA YQHFGDAVTF DTTYKKSKYM MPFVTFSGVN HHLQTVMFGC  300
AFLVEETESS FSWLFETWLA AMGGKAPGSL VTDQNRAMKA AIGKVFPNSF HRFCKWYILS  360
RTKQKLCHAY SEHPALRDEL ESCVIGSETI STFEASWMSI IEKYDLRKNT WLQAIYNIRQ  420
KWVPLYMMDT FFAEISPTHK LETMNDFYKK YFNTKTTLEV FLNQLDLTMA SRYENEAQAD  480
IDTWFEATTK TAWPIEKQAA STYTKAVFSK FQEEFTESLG YIIQKTEDGS ISKFSIRKDE  540
DNPSDVFCVT YNASSKMAKC SCKYFEFSGI LCRHILGVFV IVDPRTLPPD YFLKRWTRNA  600
KHDELSEDNN NSHHDATCQS TASRYNVLCA NVIRCAEKGS VSKATYKAAK DILHKAYEEI  660
ISYERNPGRG LQRDAININE DITIDDERNL IF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G16010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0656550.0AK065655.1 Oryza sativa Japonica Group cDNA clone:J013037J06, full insert sequence.
GenBankAK1218530.0AK121853.1 Oryza sativa Japonica Group cDNA clone:J033101P07, full insert sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664437.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3NC930.0J3NC93_ORYBR; Uncharacterized protein
STRINGOB12G16010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-148FAR1-related sequence 5