PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G14410.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 407aa    MW: 46486.8 Da    PI: 6.3919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G14410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-16156202148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT  Ed +lv++v+q+G + W+ I+ +++ gR +kqc++rw+++l
     OB12G14410.1 156 KGHWTLKEDRKLVKLVEQFGLKKWSQISGMLP-GRVGKQCRERWFNHL 202
                      789*****************************.*************97 PP
2Myb_DNA-binding48.42.1e-15208250145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd  l++ +k+ G++ W+ Ia+++  gRt++++k++w+
     OB12G14410.1 208 KDTWSEEEDMVLIEIHKEVGNR-WAEIAKRLH-GRTENSIKNHWN 250
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.759151206IPR017930Myb domain
SuperFamilySSF466892.68E-30154249IPR009057Homeodomain-like
SMARTSM007172.5E-14155204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-26157209IPR009057Homeodomain-like
CDDcd001673.16E-13159202No hitNo description
PfamPF139215.5E-17159216No hitNo description
PROSITE profilePS5129418.745207257IPR017930Myb domain
SMARTSM007174.4E-15207255IPR001005SANT/Myb domain
CDDcd001679.37E-12210253No hitNo description
Gene3DG3DSA:1.10.10.601.9E-21210255IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDTLLDLSYS DSENLTMDFS WLFHPQTAIS DGMPFDSFLQ QDGHHRQEQH HVDLDHPFEA  60
EFTTVHEPAL AGGSVHPFTT LYDIDHELCR RGINRKGRTD GEASSIFLLM PKAEASSHLV  120
RDVHAGAYDD ACGMNGKLVS RSKASRKASK KADAVKGHWT LKEDRKLVKL VEQFGLKKWS  180
QISGMLPGRV GKQCRERWFN HLRPNIKKDT WSEEEDMVLI EIHKEVGNRW AEIAKRLHGR  240
TENSIKNHWN ATKRRQFARR RNRSTSKSGT ALQDYIKSLD IDTLSPQESL MNNERSGSNP  300
SDMMITTQGT LFLDEYNCSH SHTSEEHIVP SCDGFPADLW RGLFDRKEEE ETQYLLYDMD  360
SHVDMNCIFS HSDYGSNIEP GLTSLVTPEE GFSRKQGYAF PDGLVQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-411552563104C-Myb DNA-Binding Domain
1msf_C8e-411552563104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G14410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664387.10.0PREDICTED: uncharacterized protein LOC102717115
TrEMBLJ3NBT30.0J3NBT3_ORYBR; Uncharacterized protein
STRINGOB12G14410.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-63myb domain protein 98