PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB12G14220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 413aa MW: 45452.9 Da PI: 6.9655 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.3 | 6.9e-07 | 233 | 254 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H OB12G14220.1 233 FCSICGKGFKRDANLRMHMRGH 254 6*******************98 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 357 | 371 | 6 | 20 |
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H OB12G14220.1 357 CGTSFSRKDKLFAHV 371 **************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.42E-6 | 231 | 254 | No hit | No description |
PROSITE profile | PS50157 | 12.092 | 232 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0023 | 232 | 254 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 233 | 258 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 5.6E-4 | 233 | 254 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 234 | 254 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 70 | 287 | 320 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.42E-6 | 320 | 346 | No hit | No description |
SMART | SM00355 | 55 | 325 | 347 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MDRDQAANLS AMNPLYQFMA DQDALLGMGM QQQQMLASAS IRHMDWSPDT MLDNLTFIEE 60 KIRQVKDVIR AMAGRRGPAP GDLAQQQQQQ LVNADLTCLI VQLISTAGSL LPSLRNSSFP 120 SRSPPPPPAG AGAGAGAGAG QAVGLAAGES SSSVRNEVNR EEEMGSPDYE ELFKGWTNGG 180 AMDECIGDDD DIAGGEEQGV KADVENPPPA LPETSYQVLQ LEEDEILAPH THFCSICGKG 240 FKRDANLRMH MRGHGDEYKS AAALAKPPAS GDEERAGRPE ERPELRYSCP FAGCKRNRMH 300 ASFQPLKTIL CVKNHYKRSH TEKRHICGRC GAKKFSVMAD LKTHEKHCGR DRWLCSCGTS 360 FSRKDKLFAH VALFQGHAPA LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB12G14220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121826 | 0.0 | AK121826.1 Oryza sativa Japonica Group cDNA clone:J033099G14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664377.2 | 0.0 | PREDICTED: uncharacterized protein LOC102714333 | ||||
Swissprot | Q2QX40 | 1e-176 | ART1_ORYSJ; Zinc finger protein STAR3 | ||||
TrEMBL | J3NBR4 | 0.0 | J3NBR4_ORYBR; Uncharacterized protein | ||||
STRING | OB12G14220.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 7e-81 | C2H2 family protein |