PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB12G13670.1

Common Name

LOC102710356

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 818aa MW: 93735.7 Da PI: 5.015

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB12G13670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.5	2.5e-24	97	183	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ + +++ +++ trt+Cka+++ + +++g+w+v++++ eHnHel+ OB12G13670.1 97 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPDTRTNCKAMVRFRVDSEGHWRVIQIVPEHNHELV 183 7***************************************9988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-22	97	183	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.5E-27	294	386	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.446	574	612	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.1E-4	578	605	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.0E-5	587	614	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MEDTSIAIEI DGEAICLDSV GDNEEQGSQE NQEIQIIYDA ESEGQVAFDN EEQGGQEHTA 60 RNGEEDQENI PVIPSREELT EELRNKIANS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT 120 KTIRTKDYYC SKEGLKDDEQ LTEANFNKPD TRTNCKAMVR FRVDSEGHWR VIQIVPEHNH 180 ELVRPEEVHL LRSVRTLSIP KPGVLNAMVN AEIQAMHDNL HMNDDGAECR AQLSIQSYKL 240 LEPEDSESLV GYFKHRTIEQ GMFYWDVQVE DGRMTNFFWR DGRSRIDYDC FGDVMVFDTT 300 CRTSKYNMIC APFVGVNHHG QNVIFGCAFL LDESSTSYEW LFKSFLDSMG GRPPKTIFTV 360 KDETISKVID GVFPETHHCI CEWSIENTLQ SHLGTLNDSG TFHSMFKKCM RECESEAEFE 420 ETWALMLDKC NIQDHQWLAD LYQQRRKWCT ALHKDAFDGG INSHDRSDSS NNALSSIADE 480 STPPNQFILE FDKLVGSWRT DESAEDIQCN QTSPDCTIKH SSILQHAAEI YTRKVYKSLE 540 MEYLDGCNGT SYQEIQCSET LYRFEFILQR IGPKVCIVFL DTSSMELNCS CKKFETMGIL 600 CSHAINALDF KNIDRLPERY ISKRWTKYVR RGTYLFPADE FLGQDFIEPE PAFRNKAMRF 660 VYDLLMKSKG HQDTRKLILD MLENGEKTLE SVCELRRLNA HPSGRDKDGS KVEKRKKKSA 720 KQDKSSRNVR QAVLSQTTDT VLVDPPNQNQ YYAAEDIATN SSIGRPFFYQ GYPAAGVSTS 780 QIQGQGHTNM HSVPQCAPQE YSAYGPVHPP TFGSGRNF

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MEDTSIAIEI DGEAICLDSV GDNEEQGSQE NQEIQIIYDA ESEGQVAFDN EEQGGQEHTA  60
RNGEEDQENI PVIPSREELT EELRNKIANS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT  120
KTIRTKDYYC SKEGLKDDEQ LTEANFNKPD TRTNCKAMVR FRVDSEGHWR VIQIVPEHNH  180
ELVRPEEVHL LRSVRTLSIP KPGVLNAMVN AEIQAMHDNL HMNDDGAECR AQLSIQSYKL  240
LEPEDSESLV GYFKHRTIEQ GMFYWDVQVE DGRMTNFFWR DGRSRIDYDC FGDVMVFDTT  300
CRTSKYNMIC APFVGVNHHG QNVIFGCAFL LDESSTSYEW LFKSFLDSMG GRPPKTIFTV  360
KDETISKVID GVFPETHHCI CEWSIENTLQ SHLGTLNDSG TFHSMFKKCM RECESEAEFE  420
ETWALMLDKC NIQDHQWLAD LYQQRRKWCT ALHKDAFDGG INSHDRSDSS NNALSSIADE  480
STPPNQFILE FDKLVGSWRT DESAEDIQCN QTSPDCTIKH SSILQHAAEI YTRKVYKSLE  540
MEYLDGCNGT SYQEIQCSET LYRFEFILQR IGPKVCIVFL DTSSMELNCS CKKFETMGIL  600
CSHAINALDF KNIDRLPERY ISKRWTKYVR RGTYLFPADE FLGQDFIEPE PAFRNKAMRF  660
VYDLLMKSKG HQDTRKLILD MLENGEKTLE SVCELRRLNA HPSGRDKDGS KVEKRKKKSA  720
KQDKSSRNVR QAVLSQTTDT VLVDPPNQNQ YYAAEDIATN SSIGRPFFYQ GYPAAGVSTS  780
QIQGQGHTNM HSVPQCAPQE YSAYGPVHPP TFGSGRNF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB12G13670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065838	0.0	AK065838.1 Oryza sativa Japonica Group cDNA clone:J013039J03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006663840.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	J3NBK9	0.0	J3NBK9_ORYBR; Uncharacterized protein
STRING	OB12G13670.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-87	FAR1-related sequence 5

Link Out ? help Back to Top
Entrez Gene	102710356