PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G13190.1
Common NameLOC102705482
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 490aa    MW: 52760 Da    PI: 7.1388
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G13190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.11.2e-10186213734
                   HHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeek 34 
                    rr+++NReAAr+sR+RKka+i++Le  
  OB12G13190.1 186 MRRLAQNREAARKSRLRKKAYIQQLESS 213
                   69***********************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0095179233IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.151182226IPR004827Basic-leucine zipper domain
PfamPF001707.8E-8185218IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-7185226No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-7186227No hitNo description
PROSITE patternPS000360187202IPR004827Basic-leucine zipper domain
PfamPF141443.9E-30264338IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGESRSSAGQ NPHRVLGYGF HGSFANSMPS ANLLQGEQGG GAATYFGELE EALAHQVATL  60
RRAQQTASTT TTSTAHHGHT TPFSTAATAA ATATARPPPT LDIFPSWPMG SLLTPKEGCS  120
NVTADTTDSA SSSKNNSDQK TSSDKHGAVA GMASQLDQIP QQQKKKMAAN STHSDRMTKA  180
LDPKIMRRLA QNREAARKSR LRKKAYIQQL ESSKLKLAQM EQDLERARSQ GLVLGGSPGG  240
NVSSGAAVFD GEYGRWLDDG SRRMAELHGG LHAHLPDGDL RAIVDDALAH YDELFRLRAA  300
AAKADVFHLI TGTWATPAER CFLWIGGFRP SDLLKTVAPQ LDPLTEQQVV GIYSLQQSSQ  360
QAEEALSQGL EQLHQSLAET VANGGSVIDE ASLGSFMGYM ALALGKLSNL EGFVIQADNL  420
RQQTLHQMHR ILTIRQAARC FLAIGEYHNR LRALSSLWAS RPQEILVADE SNCGEISIAA  480
QPSESQFSAF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G13190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016200.0AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBankFJ7509290.0FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698654.10.0PREDICTED: transcription factor TGA6-like
RefseqXP_015698655.10.0PREDICTED: transcription factor TGA6-like
RefseqXP_015698656.10.0PREDICTED: transcription factor TGA6-like
RefseqXP_015698657.10.0PREDICTED: transcription factor TGA6-like
SwissprotQ2QXL00.0TGL11_ORYSJ; Transcription factor TGAL11
TrEMBLJ3NBG10.0J3NBG1_ORYBR; Uncharacterized protein
STRINGOB12G13190.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44443670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-139bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]