PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB12G11000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 161aa MW: 17348.7 Da PI: 9.047 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 24.8 | 4.3e-08 | 142 | 160 | 2 | 20 |
--SS-EEEEEEE--TT-SS CS WRKY 2 dDgynWrKYGqKevkgsef 20 +Dgy+WrKYG K+++g++f OB12G11000.1 142 EDGYQWRKYGEKKIQGTDF 160 8***************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-7 | 132 | 159 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.01E-6 | 135 | 160 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-5 | 142 | 160 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MAAAAAAAVA HQAGDDEVAM KEVAQVYELI KTHQPLLLLH HNSQQQQQQL AYSLLTEAMR 60 ALNVALSVMK HLPSSPAPAA IPVNMIKPEV TPASSSTATA ADGGDNQVGG GKPTRRSAAK 120 RRRINGEDKS SCFQLTTMVP HEDGYQWRKY GEKKIQGTDF T |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 119 | 123 | KRRRI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB12G11000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006663747.1 | 1e-115 | PREDICTED: probable WRKY transcription factor 53 | ||||
TrEMBL | J3NAU2 | 1e-116 | J3NAU2_ORYBR; Uncharacterized protein | ||||
STRING | OB12G11000.1 | 1e-117 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5045 | 26 | 63 |