PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB12G10480.1

Common Name

LOC102722917

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 157aa MW: 17678.3 Da PI: 7.885

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB12G10480.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.4	1.2e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l+++p+ +r da+sslvyeA+ar+rdPvyG+v+ i+ lq+q+++l+++lal+ OB12G10480.1 7 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLQEVPPAQRADAVSSLVYEANARMRDPVYGCVAAISFLQHQVSHLQKQLALA 103 7**********************************************************************************************99 PP DUF260 98 kee 100 +++ OB12G10480.1 104 HAH 106 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.643	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-44	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MAGSGTPCAS CKLLRRRCTS ECVFAPYFPA EEAQRFAMVH RVFGASNVSK MLQEVPPAQR 60 ADAVSSLVYE ANARMRDPVY GCVAAISFLQ HQVSHLQKQL ALAHAHTAAL QLQLQQQQQL 120 QHQLQQDHDQ HEHCILQNAL PQLMLQDAFL KKESMWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	3	104	7	108	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	3	104	7	108	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB12G10480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241761	1e-148	AK241761.1 Oryza sativa Japonica Group cDNA, clone: J065205C18, full insert sequence.
GenBank	AP014967	1e-148	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	AP014968	1e-148	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	BX000494	1e-148	BX000494.2 Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	BX000497	1e-148	BX000497.1 Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015698583.1	1e-112	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-55	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	J3NAP0	1e-111	J3NAP0_ORYBR; Uncharacterized protein
STRING	OB12G10480.1	1e-112	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-49	LBD family protein

Link Out ? help Back to Top
Entrez Gene	102722917

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]