PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G10090.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 524aa    MW: 61478.3 Da    PI: 7.9493
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G10090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.62e-2330121190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                   ++Yn+YAk  GFs+rk++ +++  ++e+ +r+++Cs++g+r++   + ++++r++ra tr+gC+a+l++k++k +g w+v +++++H+H+++
  OB12G10090.1  30 DYYNKYAKGKGFSIRKDYIRRHCLSKEVFHRRYTCSRQGYRKDMYMDpNKRSRQPRAFTRCGCDAQLEIKLDKeRGDWYVLEFVSKHSHPMC 121
                   69*****************************************99887889999******************99****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2230121IPR004330FAR1 DNA binding domain
PfamPF105516.5E-13217260IPR018289MULE transposase domain
PROSITE profilePS509668.654319369IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MDESRASLED QEEYDMMINL RSKSEKQGYD YYNKYAKGKG FSIRKDYIRR HCLSKEVFHR  60
RYTCSRQGYR KDMYMDPNKR SRQPRAFTRC GCDAQLEIKL DKERGDWYVL EFVSKHSHPM  120
CKPDEVAFLR SLRRLTEAQK ANVMGLKDVG LQQHQVMDVM ERDHGGYEAT GFTSRDLYNF  180
FVRQRKKRIQ EGDAEHVIKL FWTDAQSRID YDAFGEVVVF DSTYRVNKYN LPFIPFVGVN  240
HHGSTIIFAC AIVSDEKEAE LDAKASQSLP FTDNDASPIE KDAACVFTPR AFKKVKMEIY  300
KVMDWEFIDI IDEDICVRYV LSLKQTEKII IVKCLYEEAS LVSVVCPCRK MECESIPCEH  360
IFSVIHFLNL ERIPECCIVP RWTLRAKYAF PSDRYGEVYT WSEQMERYRQ LHTFGSEAFF  420
KCSMSEERTL KVMKFLQSLI HEDETSASID MESQYGHVIG QSSRSNIGYT DHVHDPIEVI  480
PKGAPTRRMR GFLEKRERKC GYCRVRSHTI RTCSIYLRKV AQDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G10090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698641.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like isoform X2
TrEMBLJ3NAK10.0J3NAK1_ORYBR; Uncharacterized protein
STRINGOB12G10090.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-45FAR1-related sequence 5