PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB11G27850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 137aa MW: 15335.6 Da PI: 8.9437 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C Cg++F ++ L H +H OB11G27850.1 46 YECRTCGRRFASHQALGGHRTSH 68 99************999998887 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg+ F L H+r+H OB11G27850.1 84 HACEVCGMGFGMGQALGGHMRRH 106 67********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.6E-4 | 32 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.0E-9 | 45 | 70 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.097 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.1E-7 | 46 | 106 | No hit | No description |
PROSITE profile | PS50157 | 10.741 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.7E-9 | 83 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.57 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.078 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MDDYCTSPHL EEEEDDVQLS LACGSSAATP QSRKRPRRRE EEAAAYECRT CGRRFASHQA 60 LGGHRTSHLR PTKRRPRPSK PVVHACEVCG MGFGMGQALG GHMRRHRPIN NVGMGLKQII 120 MPEIRPSCTL QLLDLFV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB11G27850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616383.1 | 3e-47 | zinc finger protein ZAT1 | ||||
TrEMBL | J3NAE9 | 2e-96 | J3NAE9_ORYBR; Uncharacterized protein | ||||
STRING | OB11G27850.1 | 3e-97 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 4e-08 | C2H2 family protein |