PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G22890.1
Common NameLOC102705381
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 390aa    MW: 42328.2 Da    PI: 8.8145
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G22890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC726.7e-23143186245
           WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    ep+rCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  OB11G22890.1 143 VEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEG 186
                   59***************************************996 PP
2QLQ58.22.4e-2090126137
           QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                   ++FT++Q+++L++Q+l+yK++aan+ vP+ Ll++i++
  OB11G22890.1  90 GPFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRR 126
                   59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-1290126IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-1491125IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.88891126IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.136142186IPR014977WRC domain
PfamPF088793.3E-19144185IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MLGSSGGHGH PRSLPQEFHG RCDEQQGGGQ QDGFLVREAR AASPSSSFLG STSSSSGGGG  60
QMLSFSPNET AGLGLSSGGG MQGVLARVRG PFTPTQWMEL EHQALIYKHI AANVSVPSSL  120
LLPIRRSLHP WGWGSFPAGC ADVEPRRCRR TDGKKWRCSR DAVGDQKYCE RHINRGRHRS  180
RKHVEGRKAT LAMAEPSMAI AAGASTRSHT VARQKQVKSS AANVTDPFSR QSNRKQNAVD  240
QLSPLDSFDF SSTQSSPNYE NVALSPLKLH HDHDDESYIG HVEGSLSEKG NMMHEIQLTV  300
SKETLDDGPL GEVFKRKNCQ SDSANILTDK WTESPNLSFS PGIQQMATKF NSVSTSNTVN  360
SGGTTLENHM TDNGYLTARM MNPLIVPTLL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G22890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1030550.0AK103055.1 Oryza sativa Japonica Group cDNA clone:J033117J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662983.10.0PREDICTED: growth-regulating factor 8-like
SwissprotQ6AWY10.0GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLJ3N9030.0J3N903_ORYBR; Uncharacterized protein
STRINGOB11G22890.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-39growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]