PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G22170.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 657aa MW: 72172.7 Da PI: 7.7778

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G22170.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	214.8	4.7e-66	271	506	3	236
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 L++cA+av++gd + a ++L++++e++s +gd++qRla++f+e+L+arla+++s++y++l +++ts +++ l a+klf ++ i k+s++ N OB11G22170.1 271 AMLIHCAQAVATGDRRGAAETLKQIKEHSSVRGDATQRLASFFAEGLEARLAGTGSQVYQSLMARRTS---TVDFLRAYKLFTAACCIKKVSFVFSN 364 689*********************************************************999999...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 ++I+ a++g +++Hi+D+++ +G+QWp L++ La+R++gpp++RiTg++ p++g ++e+eetg+rL++ A+e+gvpf+f++ +a r+e+++ ++L OB11G22170.1 365 RTIYGAAAGRRKLHIVDYGVHYGFQWPGLFKLLAAREGGPPEVRITGIDLPQPGfrPAREIEETGRRLSSCAREFGVPFRFHA-IAARWETVRRDDL 460 *************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsP 236 +v+p+E+l+Vn+ ++l +l+des + + +rd+vL ++ + P OB11G22170.1 461 AVDPEEVLVVNCLHHLNTLHDESPDGGEdtpsPRDAVLGNIRAMGP 506 ****************9986543333349*******9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.12	243	657	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-63	271	506	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence Send to blast
MEEDIDDRFF YQYPDHPALL DAQQPYAQIL DDVSSSAVAV TSNTNTSSSS DDHSGAATNS 60 TSDDSASATC PYNPVDLYQL LRSPAHPPGT LAGLPEPDHH HHTLLVADVE GEVGADPKLL 120 FAGADRDSVE MFNLAFLKGR EEAKKFLPTN DTLFAGFHGS ARPETETEPV VDETALRTFG 180 GRDGGGRKKN RHGEDDLEAE TGRSSKLMLP GREDTAAARE MFDEIMLDEY EVFIKGMTEL 240 RIAMDSEAEK NTRNSGRREA RAKAPVVDLH AMLIHCAQAV ATGDRRGAAE TLKQIKEHSS 300 VRGDATQRLA SFFAEGLEAR LAGTGSQVYQ SLMARRTSTV DFLRAYKLFT AACCIKKVSF 360 VFSNRTIYGA AAGRRKLHIV DYGVHYGFQW PGLFKLLAAR EGGPPEVRIT GIDLPQPGFR 420 PAREIEETGR RLSSCAREFG VPFRFHAIAA RWETVRRDDL AVDPEEVLVV NCLHHLNTLH 480 DESPDGGEDT PSPRDAVLGN IRAMGPADGP RGVRPVRGER HLRRALLPDA VQGGALLLRG 540 AVRRAGRHRP ARQRRAAADR AGHPGAVRAQ RRRLRGRRPG GPAGDVQAGA GGAPPPXXXX 600 XXXXXXLPLD PGLVRLVRDM VGRLYHRDFV VDVDHRWLLQ GWKGRILYAM STWVARS

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence Send to blast

MEEDIDDRFF YQYPDHPALL DAQQPYAQIL DDVSSSAVAV TSNTNTSSSS DDHSGAATNS  60
TSDDSASATC PYNPVDLYQL LRSPAHPPGT LAGLPEPDHH HHTLLVADVE GEVGADPKLL  120
FAGADRDSVE MFNLAFLKGR EEAKKFLPTN DTLFAGFHGS ARPETETEPV VDETALRTFG  180
GRDGGGRKKN RHGEDDLEAE TGRSSKLMLP GREDTAAARE MFDEIMLDEY EVFIKGMTEL  240
RIAMDSEAEK NTRNSGRREA RAKAPVVDLH AMLIHCAQAV ATGDRRGAAE TLKQIKEHSS  300
VRGDATQRLA SFFAEGLEAR LAGTGSQVYQ SLMARRTSTV DFLRAYKLFT AACCIKKVSF  360
VFSNRTIYGA AAGRRKLHIV DYGVHYGFQW PGLFKLLAAR EGGPPEVRIT GIDLPQPGFR  420
PAREIEETGR RLSSCAREFG VPFRFHAIAA RWETVRRDDL AVDPEEVLVV NCLHHLNTLH  480
DESPDGGEDT PSPRDAVLGN IRAMGPADGP RGVRPVRGER HLRRALLPDA VQGGALLLRG  540
AVRRAGRHRP ARQRRAAADR AGHPGAVRAQ RRRLRGRRPG GPAGDVQAGA GGAPPPXXXX  600
XXXXXXLPLD PGLVRLVRDM VGRLYHRDFV VDVDHRWLLQ GWKGRILYAM STWVARS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-28	275	481	25	226	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	185	GGRDGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G22170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006663689.1	0.0	PREDICTED: scarecrow-like protein 34
TrEMBL	J3N8T1	0.0	J3N8T1_ORYBR; Uncharacterized protein
STRING	OB11G22170.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	3e-74	GRAS family protein