PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB11G21910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 867aa MW: 95278 Da PI: 6.6931 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 162 | 263 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + +++e OB11G21910.1 162 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGENGE 255 99*****************************7333.34459************************************************..449999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+v+r+ OB11G21910.1 256 LRVGVRRA 263 *****996 PP | |||||||
2 | Auxin_resp | 114.7 | 8.2e-38 | 288 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp Wp+SkWrsLk OB11G21910.1 288 AWHAVNTGTRFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWPESKWRSLK 370 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-42 | 155 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.63E-41 | 157 | 291 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.50E-22 | 160 | 262 | No hit | No description |
SMART | SM01019 | 9.9E-24 | 162 | 264 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-21 | 162 | 263 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 162 | 264 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.7E-35 | 288 | 370 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.9E-10 | 737 | 823 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 21.936 | 739 | 823 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.6E-11 | 742 | 815 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 867 aa Download sequence Send to blast |
MAAAEVEAAA GLGGGEGDAA AAAAAAARGE LWWGGGGGGG GGGGGGGGED ALFTELWSAC 60 AGPLVTVPRV GEKVFYFPQG HIEQVEASTN QVGEQRMQLY NLPWKILCEV MNVELKAEPD 120 TDEVYAQLTL LPESKQQEEN GSSEEEPTAP PATHVRPRVH SFCKTLTASD TSTHGGFSVL 180 RRHADECLPP LDMSRQPPTQ ELVAKDLHGV EWRFRHIFRG QPRRHLLQSG WSVFVSAKRL 240 VAGDAFIFLR GENGELRVGV RRAMRQQTNV PSSVISSHSM HLGVLATAWH AVNTGTRFTV 300 YYKPRTSPAE FVVPYDRYME SLKRNYSIGM RFKMRFEGEE APEQRFTGTI VGMGDSDPAG 360 WPESKWRSLK VRWDEASSIP RPERVSPWQI EPAVSPPPIN PLPVPRTKRL RPNVTASTTD 420 SSATVKEAAP KVAVEPEPNG MHRAFQTQEN ATPKAGFGNN SELDTAQKSI LRPSGFDREK 480 NNIPMQWKAG SDGRMQMNRP ESYSEMLSGF QPPKDVQTPQ GFCSLSEQIK AGHSNFWHTV 540 NAQYQDQQGN HNIFPGSWSF MPPNTGLGLN KPSYSMVQEV GGLSQRAANT KFGSGVYAPL 600 PGRGIEQYSG GWFGHMMPSS HMDDTQPRLI KPKPLVVAHG DVQKAKGASC KLFGIHLDSP 660 AKSEPLKSPS SVVYDGMPQT PGATEWHRPD VTEVEKYSDP SKPMKPLDAP QSDSVPEKPL 720 SCQQASRNMP CKSQGGSTRS CKKVHKQGIA LGRSVDLTKF NGYEELIAEL DDMFDFNGEL 780 KGPNKDWMVV YTDNEGDMML VGDDPWIEFC DMVHKIFIYT REEVQRMNPG TLNSRSEDSH 840 ANSMERSSVG REMRGCLSTS SLNSDNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-175 | 35 | 392 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 1e-175 | 35 | 392 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 1e-175 | 35 | 392 | 2 | 354 | Auxin response factor 1 |
4ldx_A | 1e-175 | 35 | 392 | 2 | 354 | Auxin response factor 1 |
4ldx_B | 1e-175 | 35 | 392 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB11G21910.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under light or dark conditions and gravitropic stimulation of coleptile. {ECO:0000269|PubMed:12369618, ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ306306 | 0.0 | AJ306306.1 Oryza sativa subsp. japonica mRNA for auxin response factor 1 (arf1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015697998.1 | 0.0 | PREDICTED: auxin response factor 23 | ||||
Swissprot | Q2R3F5 | 0.0 | ARFW_ORYSJ; Auxin response factor 23 | ||||
TrEMBL | J3N8Q5 | 0.0 | J3N8Q5_ORYBR; Auxin response factor | ||||
STRING | OB11G21910.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |