PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB11G21270.1 | ||||||||
Common Name | LOC102720000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 302aa MW: 34648.1 Da PI: 9.0842 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 103 | 125 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C ++++++ +L Hi+ H OB11G21270.1 103 SCSVCWRVYPTSRLLSIHISEaH 125 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 3.2 | 75 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 77 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.4 | 102 | 125 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 104 | 125 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 140 | 165 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 142 | 165 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MQQRPAVAAM EEEQAPVVAR LGFWLAARRR LAPDDPFFAA GNMERELLAK QVALDLSDDE 60 RYQLERMEVA STNTFFCPIS GCGAHLDCLE NFEDHYSTRH TASCSVCWRV YPTSRLLSIH 120 ISEAHDSFFQ AKVARGFPMY ECLVEGCGVK LKSYKSRQQH LVDKHQFPKS FEFFKKARPS 180 QRQRHKNQKQ RQTVHKGGEE TMETLMDVDG KGSRHMNRRY QPKQRHDVKE SKENEQHSCK 240 EPSNSEMEVD KQIDELSSAV SKLSTADSTP SSISFGHRRS RGLAFVPRSI RQNKQVSQAQ 300 PK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB11G21270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060702 | 0.0 | AK060702.1 Oryza sativa Japonica Group cDNA clone:001-030-G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006663466.1 | 0.0 | PREDICTED: zinc finger protein 511 | ||||
TrEMBL | J3N8J1 | 0.0 | J3N8J1_ORYBR; Uncharacterized protein | ||||
STRING | OB11G21270.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10911 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 3e-92 | zinc ion binding;nucleic acid binding;zinc ion binding |
Link Out ? help Back to Top | |
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Entrez Gene | 102720000 |