PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB11G21110.1 | ||||||||
Common Name | LOC102716258 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 237aa MW: 25276.6 Da PI: 9.0414 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.2 | 1.6e-33 | 129 | 187 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+ OB11G21110.1 129 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSRDEAVVVTTYEGTHTHP 187 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.3E-35 | 114 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-30 | 121 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.308 | 124 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-40 | 129 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-27 | 130 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0010055 | Biological Process | atrichoblast differentiation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MENFPILFAT QPSSSTSSSY HFMSSSAGTG GGHDHRHHHG LQAGGNGGGG TSLGHGLFMG 60 SSSSLSNSKD DVDGGGGGQE ELSAGVDAAG DGDRLQGGAV AGAAGRKNGE KKERRPRFAF 120 QTRSQVDILD DGYRWRKYGQ KAVKNNKFPR SYYRCTHQGC NVKKQVQRLS RDEAVVVTTY 180 EGTHTHPIEK SNDNFEHILT QMHIYSSTAS SASPHPLFLP SSSSSPAAAA HSTHLFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-27 | 120 | 188 | 8 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 2e-27 | 120 | 188 | 8 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00506 | DAP | Transfer from AT5G13080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB11G21110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT828238 | 1e-159 | CT828238.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112H02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662941.1 | 1e-176 | PREDICTED: probable WRKY transcription factor 56 | ||||
TrEMBL | J3N8H5 | 1e-174 | J3N8H5_ORYBR; Uncharacterized protein | ||||
STRING | OB11G21110.1 | 1e-175 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 9e-57 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Entrez Gene | 102716258 |