PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G19520.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 263aa MW: 28178 Da PI: 6.6254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G19520.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	6.8e-10	85	132	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OB11G19520.1 85 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 132 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-17	79	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.53E-12	79	136	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-17	81	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.802	81	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-7	85	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-11	87	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MAHDGFLGGG FHALQAPWPL PPPLPEPEKK AKKCKLSADA TANQDTKPLA GEAGHAGNGK 60 GKDVAVEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKAVM 120 LDEIINYVQS LQRQVEFLSM KLSTVNPQLD FDVDNFLPKD QPSEPSLPAP LSLPPPQPPL 180 SYSPECATPA AIGYSPSQGT AMQSVVASTK GFEMAPTFAS HGIPAPSSLD AFHSANSQAG 240 SCMQMWEDDL QSVVQMGFRG NAA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G19520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037022	1e-72	BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBank	BT063660	1e-72	BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds.
GenBank	KJ726866	1e-72	KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015697652.1	1e-177	PREDICTED: transcription factor bHLH49-like, partial
Swissprot	Q9SRT2	1e-54	BH062_ARATH; Transcription factor bHLH62
TrEMBL	J3N816	0.0	J3N816_ORYBR; Uncharacterized protein
STRING	OB11G19520.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13313	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]