PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB11G14920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 141aa MW: 16180.4 Da PI: 9.438 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.3e-18 | 26 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+ +W++Ia+++ gR++k+c++rw++ OB11G14920.1 26 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 71 899*****************************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.726 | 21 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.99E-20 | 24 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 25 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-17 | 26 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-28 | 27 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.37E-14 | 29 | 70 | No hit | No description |
PROSITE profile | PS50090 | 4.043 | 73 | 141 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MGSSSTTNTS DGAVKPASSA SSACPRGHWR PGEDEKLRQL VEKYGPQNWN SIAEKLEGRS 60 GKSCRLRWFN QLDPRINKRP FTEEEEERLL AAXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXTAFRR C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-15 | 26 | 92 | 4 | 70 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-15 | 26 | 92 | 4 | 70 | C-Myb DNA-Binding Domain |
1msf_C | 1e-15 | 26 | 92 | 4 | 70 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB11G14920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ266021 | 1e-96 | FJ266021.1 Oryza brachyantha clone OB__Ba045I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169060.1 | 2e-50 | myb domain protein 69 | ||||
TrEMBL | B9V0J1 | 8e-59 | B9V0J1_ORYBR; Myb-like DNA-binding domain containing protein | ||||
TrEMBL | J3N6Q6 | 1e-59 | J3N6Q6_ORYBR; Uncharacterized protein | ||||
STRING | OB11G14920.1 | 2e-60 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 9e-36 | myb domain protein 52 |