PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB11G14310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 230aa MW: 26311.2 Da PI: 10.0172 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.5 | 9.9e-48 | 9 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtd+elv++yL++k+ g +l + vi+evd+yk++PwdLp+k+ ++ekewyfFs+rd+ky++g+r+nra gyW+a g dk+v s OB11G14310.1 9 LPPGFRFHPTDDELVMYYLCRKCGGLPLAA-PVIAEVDLYKFNPWDLPEKAMGGEKEWYFFSPRDRKYPNGQRPNRA---GYWRAAGADKPVGS--P 99 79*************************999.89***************8888999*********************6...************99..7 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + v +kk Lvfy g+ p+g+kt+W+mheyrl OB11G14310.1 100 RPVAIKKALVFYAGKPPRGVKTNWIMHEYRL 130 79***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-57 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.021 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-25 | 10 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MECGGALQLP PGFRFHPTDD ELVMYYLCRK CGGLPLAAPV IAEVDLYKFN PWDLPEKAMG 60 GEKEWYFFSP RDRKYPNGQR PNRAGYWRAA GADKPVGSPR PVAIKKALVF YAGKPPRGVK 120 TNWIMHEYRL ADVDRSAAAR KTKSNNALRL DDWVLCRIYN KKGVIERYDT VDAGEDVKPA 180 TASRYTGSQN QTKFNRARHL HRQKQPKYNR DKFMLLGDVM QTCMHATIEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-73 | 7 | 167 | 13 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB11G14310.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028184 | 0.0 | AB028184.1 Oryza sativa mRNA for OsNAC5 protein, complete cds. | |||
GenBank | AK063399 | 0.0 | AK063399.1 Oryza sativa Japonica Group cDNA clone:001-114-H12, full insert sequence. | |||
GenBank | AK102475 | 0.0 | AK102475.1 Oryza sativa Japonica Group cDNA clone:J033094I01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015697580.1 | 1e-131 | PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 71-like | ||||
Swissprot | Q53NF7 | 1e-122 | NAC71_ORYSJ; NAC domain-containing protein 71 | ||||
TrEMBL | J3N6J5 | 1e-172 | J3N6J5_ORYBR; Uncharacterized protein | ||||
STRING | OB11G14310.1 | 1e-173 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11804 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 7e-93 | NAC domain containing protein 32 |
Publications ? help Back to Top | |||
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