PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G14080.1
Common NameLOC102700473
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 289aa    MW: 31351.2 Da    PI: 8.1386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G14080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ ++k  G g+W++ ++  g+ R++k+c++rw +yl
     OB11G14080.1 14 KGAWTKEEDQRLIAYIKANGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding60.92.7e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++
     OB11G14080.1  67 RGNFTEEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.466961IPR017930Myb domain
SMARTSM007178.8E-131363IPR001005SANT/Myb domain
SuperFamilySSF466892.15E-2913108IPR009057Homeodomain-like
PfamPF002492.3E-141461IPR001005SANT/Myb domain
CDDcd001673.25E-101661No hitNo description
PROSITE profilePS5129429.5162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2865116IPR009057Homeodomain-like
SMARTSM007172.0E-1866114IPR001005SANT/Myb domain
PfamPF002491.7E-1767111IPR001005SANT/Myb domain
CDDcd001672.86E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK ANGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHELLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLARG  120
VDPQTHRPLN AAAADHHSQL QAPRRFAAAA ASAGHPHHHP DHFAVLSNSP EACSHSSDDE  180
PSSATPPPPP RHLGIDLNLS ISLAPYQPQS EQLKQEEEDD AAATTTTTAS GAGSNATAVC  240
LCLPRLGLHG GEVCSCGRGG APSMQASTHM FRFITPLGGG HNSTSTTMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G14080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340440.0AC134044.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0019D06 map S10616A, complete sequence.
GenBankAC1357940.0AC135794.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084H09, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697509.10.0PREDICTED: myb-related protein 308
SwissprotP813933e-92MYB08_ANTMA; Myb-related protein 308
TrEMBLJ3N6H20.0J3N6H2_ORYBR; Uncharacterized protein
STRINGOB11G14080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-89myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]