PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G13990.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 263aa    MW: 28536.8 Da    PI: 7.9384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G13990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.68.6e-18541933128
           NAM   3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya...tgkrknra..tksgyWkatgkd 89 
                   p ++F+Ptd ++v  yL + + g +      ++  ++ e d  ++ePw L +   + ++   fF++ d + a    g+r++r+  + +  W+ + ++
  OB11G13990.1  54 PACKFNPTDADIVASYLLRAMYGPDqfpspYPA-GAVIEDDAARCEPWALMRDPGHATSAHAFFVRDDLARAassDGDRRRRVprAVKNGWHIQKTK 149
                   679*****************9998877765444.467777**********85444444555688877765553445667777522334559977665 PP

           NAM  90 kevlsk......kgelvglk.ktLvfykgrapkgektdWvmheyrl 128
                   ++ l+       ++ +vg k + L f+  ra ++++t Wvmhey++
  OB11G13990.1 150 EATLTIlrdgggGELDVGYKrRHLSFH--RAGESTSTGWVMHEYEI 193
                   55444445677544558876268***9..788888*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-1942208IPR003441NAC domain
PROSITE profilePS5100520.87552209IPR003441NAC domain
PfamPF023652.2E-1254193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MMGSARKHSA SSRRREDEAS SSSLAAAAAA AEEEEPAEGM EASRFGFLMY SGFPACKFNP  60
TDADIVASYL LRAMYGPDQF PSPYPAGAVI EDDAARCEPW ALMRDPGHAT SAHAFFVRDD  120
LARAASSDGD RRRRVPRAVK NGWHIQKTKE ATLTILRDGG GGELDVGYKR RHLSFHRAGE  180
STSTGWVMHE YEITSPALPG TVLSRIRATP RARAKDKKPE IKKEPSTSTS TSVAGECNAP  240
CQCSDRPGLS HQYSGAKPEP HVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G13990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616128.11e-78NAC domain-containing protein 89
TrEMBLJ3N6G30.0J3N6G3_ORYBR; Uncharacterized protein
STRINGOB11G13990.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.13e-08NAC domain containing protein 60