PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB11G13590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 433aa MW: 45453.1 Da PI: 8.9287 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18 | 7.9e-06 | 197 | 220 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+dC+++F +++L+ H t H OB11G13590.1 197 FPCSDCDEVFVKPDSLELHRATrH 220 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.224 | 197 | 225 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 199 | 220 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 4.6E-17 | 222 | 432 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.2E-8 | 224 | 431 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MAPSSSPMEA NAARDQDKSG KKMSRVRSWG TMGFYSSSSS SCRSRSLQPV GGEGKNGGGG 60 KKTKKKRSIT CAGSICSTKE SSVSSRGRPS RSRARGDGGS TSSRSLMAPD HGDSAAGGAV 120 VSASSSFNSV MTAATSVTAT TATTTSSSST TTSPPSALSS PLSSLGGSFR AMQIRKLSGC 180 YLQCHSVLDP RSLAAAFPCS DCDEVFVKPD SLELHRATRH AVSELGADDT SRNIVEIIFQ 240 SSWLKKNGPV CKIERILKVQ SSDKTIKKFE QYKELVKEKA SCASDEAKKN PRCVADGNEL 300 LRFHCTTFTC SLGLAGGTAL CCGSTSPAQC KLCAIIKDGF RVDGNGRIAT MATSGRAHDT 360 AEVSSDGEKR AMLVCRVVAG RVKKIGSSSS SSEEFDCDSV SSCSEGVYSD LDELFVSSPR 420 AILPCFVVIY SGY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB11G13590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110948 | 0.0 | AK110948.1 Oryza sativa Japonica Group cDNA clone:002-173-H08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662766.1 | 0.0 | PREDICTED: uncharacterized protein LOC102705571 | ||||
TrEMBL | J3N6C3 | 0.0 | J3N6C3_ORYBR; Uncharacterized protein | ||||
STRING | OB11G13590.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 2e-70 | C2H2-like zinc finger protein |