PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G13590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 433aa    MW: 45453.1 Da    PI: 8.9287
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G13590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-06197220123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   ++C+dC+++F  +++L+ H  t H
  OB11G13590.1 197 FPCSDCDEVFVKPDSLELHRATrH 220
                   89******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.224197225IPR007087Zinc finger, C2H2
PROSITE patternPS000280199220IPR007087Zinc finger, C2H2
SuperFamilySSF563994.6E-17222432No hitNo description
Gene3DG3DSA:3.90.228.101.2E-8224431IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAPSSSPMEA NAARDQDKSG KKMSRVRSWG TMGFYSSSSS SCRSRSLQPV GGEGKNGGGG  60
KKTKKKRSIT CAGSICSTKE SSVSSRGRPS RSRARGDGGS TSSRSLMAPD HGDSAAGGAV  120
VSASSSFNSV MTAATSVTAT TATTTSSSST TTSPPSALSS PLSSLGGSFR AMQIRKLSGC  180
YLQCHSVLDP RSLAAAFPCS DCDEVFVKPD SLELHRATRH AVSELGADDT SRNIVEIIFQ  240
SSWLKKNGPV CKIERILKVQ SSDKTIKKFE QYKELVKEKA SCASDEAKKN PRCVADGNEL  300
LRFHCTTFTC SLGLAGGTAL CCGSTSPAQC KLCAIIKDGF RVDGNGRIAT MATSGRAHDT  360
AEVSSDGEKR AMLVCRVVAG RVKKIGSSSS SSEEFDCDSV SSCSEGVYSD LDELFVSSPR  420
AILPCFVVIY SGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G13590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109480.0AK110948.1 Oryza sativa Japonica Group cDNA clone:002-173-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662766.10.0PREDICTED: uncharacterized protein LOC102705571
TrEMBLJ3N6C30.0J3N6C3_ORYBR; Uncharacterized protein
STRINGOB11G13590.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-70C2H2-like zinc finger protein