PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G12830.1

Common Name

LOC102722429

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 282aa MW: 30293.6 Da PI: 6.7199

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G12830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.2	1.8e-41	20	151	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L + + a ++++w+fF++r++++ +g r+ r+t sgyWkatg+ v OB11G12830.1 20 APGFRFYPTEEELLAFYLRHRLAGTRPDVERVIPVVDVYAYHPSQLAAmagE--AsvrDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSCV 114 69*************************99***********843442..13335569***************************9999 PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++ OB11G12830.1 115 ISSaTNRVIGVKRTMVFYHGRAPTGTKTRWKMNEYKA 151 98868889*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-46	17	180	IPR003441	NAC domain
PROSITE profile	PS51005	46.531	19	181	IPR003441	NAC domain
Pfam	PF02365	8.6E-23	21	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MMAATTSSSS SGSSSDPFAA PGFRFYPTEE ELLAFYLRHR LAGTRPDVER VIPVVDVYAY 60 HPSQLAAMAG EASVRDTEQW FFFCPRAERE LHGGRPARTT PSGYWKATGS PSCVISSATN 120 RVIGVKRTMV FYHGRAPTGT KTRWKMNEYK AVADDHHAAV LHPMAPPGLR NELGVCRVYI 180 STGTLRSFDR RPLDNQAAGA FHPQAPSSSA TATANTSFAG ARGDNSRESS SSGSRELVGD 240 GPEDDAIDWS SLISSAAVDG GDDFGLIADG FNPSILGSWP QL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-29	21	152	19	143	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-29	21	152	19	143	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-29	21	152	19	143	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-29	21	152	19	143	NO APICAL MERISTEM PROTEIN
3swm_A	2e-29	21	152	22	146	NAC domain-containing protein 19
3swm_B	2e-29	21	152	22	146	NAC domain-containing protein 19
3swm_C	2e-29	21	152	22	146	NAC domain-containing protein 19
3swm_D	2e-29	21	152	22	146	NAC domain-containing protein 19
3swp_A	2e-29	21	152	22	146	NAC domain-containing protein 19
3swp_B	2e-29	21	152	22	146	NAC domain-containing protein 19
3swp_C	2e-29	21	152	22	146	NAC domain-containing protein 19
3swp_D	2e-29	21	152	22	146	NAC domain-containing protein 19
4dul_A	2e-29	21	152	19	143	NAC domain-containing protein 19
4dul_B	2e-29	21	152	19	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G12830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106277	0.0	AK106277.1 Oryza sativa Japonica Group cDNA clone:002-100-H06, full insert sequence.
GenBank	AK109939	0.0	AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006662743.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-69	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	J3N647	0.0	J3N647_ORYBR; Uncharacterized protein
STRING	OB11G12830.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	3e-64	NAC domain containing protein 61

Link Out ? help Back to Top
Entrez Gene	102722429

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]