PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G12720.1

Common Name

LOC102720556

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 481aa MW: 52572.8 Da PI: 6.8634

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G12720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.9	8.2e-12	177	205	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le OB11G12720.1 177 KTMRRLAQNREAARKSRLRKKAYIQQLES 205 6679***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.001	172	247	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-7	175	214	No hit	No description
PROSITE profile	PS50217	8.887	175	219	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-7	177	210	No hit	No description
CDD	cd14708	2.08E-20	177	228	No hit	No description
Pfam	PF00170	6.7E-9	177	206	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	180	195	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.3E-28	256	330	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MGEASSSSGQ SRQSPHVLGY GFHGTMPNPM PSANFFEQGG ATYFGELEEA LMQQVATLRR 60 TQQTATTTST LHHGDTTPFS TTATATARPP PTLDIFPSWP MRSLHTPKEG SNVTADTTDS 120 ESSSKNNSNQ NASSDQHGLV GDMAGQFDQT PQQQQHKKMA TNSPTHSSKS GKALDPKTMR 180 RLAQNREAAR KSRLRKKAYI QQLESSKLKL AQMEQDIHRA RSQGLLLGAP GGNTSSGAAM 240 FDVEYARWLE EDSRRMAELH GGLHAHLPDS DLRAIVDDTL THYNQLFALK GMAAKADVFH 300 LITGIWATPA ERCFLWMGGF RPSELLKTLI PQLDPLTEQQ VAGICSLQQS SQQAEEALSQ 360 GLEQLHQSLA ETVAGGSPLD DVNVGSFMGH MAIALSQLSN LEGFVIQADN LRQQTIHQMH 420 RILTVRQAAR CFLAIGEYHN RLRALSSLFA SRPREILVAD EGNCGELSIA AHPSESQFST 480 F

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MGEASSSSGQ SRQSPHVLGY GFHGTMPNPM PSANFFEQGG ATYFGELEEA LMQQVATLRR  60
TQQTATTTST LHHGDTTPFS TTATATARPP PTLDIFPSWP MRSLHTPKEG SNVTADTTDS  120
ESSSKNNSNQ NASSDQHGLV GDMAGQFDQT PQQQQHKKMA TNSPTHSSKS GKALDPKTMR  180
RLAQNREAAR KSRLRKKAYI QQLESSKLKL AQMEQDIHRA RSQGLLLGAP GGNTSSGAAM  240
FDVEYARWLE EDSRRMAELH GGLHAHLPDS DLRAIVDDTL THYNQLFALK GMAAKADVFH  300
LITGIWATPA ERCFLWMGGF RPSELLKTLI PQLDPLTEQQ VAGICSLQQS SQQAEEALSQ  360
GLEQLHQSLA ETVAGGSPLD DVNVGSFMGH MAIALSQLSN LEGFVIQADN LRQQTIHQMH  420
RILTVRQAAR CFLAIGEYHN RLRALSSLFA SRPREILVAD EGNCGELSIA AHPSESQFST  480
F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G12720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069411	0.0	AK069411.1 Oryza sativa Japonica Group cDNA clone:J023013G15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006662738.2	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_015698112.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	J3N636	0.0	J3N636_ORYBR; Uncharacterized protein
STRING	OB11G12720.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-136	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	102720556

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]