PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G10130.1
Common NameLOC102707908
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 306aa    MW: 33281.8 Da    PI: 7.6282
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G10130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.83.8e-3158111255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   prlrWtpeLH +Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+
  OB11G10130.1  58 PRLRWTPELHLCFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 111
                   9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2954112IPR009057Homeodomain-like
PROSITE profilePS5129412.92354114IPR017930Myb domain
SuperFamilySSF466892.33E-1555112IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-2357113IPR006447Myb domain, plants
PfamPF002495.2E-959110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
METAGKEVGS TEGGGGGGGA AAGNDGSSTS SSTVEEEGAE RRTSSSSSVR PYVRSKNPRL  60
RWTPELHLCF VRAVDRLGGQ DRATPKLVLQ LMNVRGLSIG HVKSHLQMYR SKKIDESGQV  120
IGGGSWREEH QYVHHGHGGQ AYNVGHISLP ALLHHRHITA GSGTRPRFGN AWSPWRCHAS  180
YWTHAGHHLF VGSKPYYPPP AAAEAHDAFH TASSHLPDFV VQGSSNHQRA VVLKEIICNE  240
DEGEGPHLNL DLSLNIVNAG PRREKRKREF SLGKKHNEED HDNHTGIIGG DQEEESCATG  300
LSLSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1859113458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1859113458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1859113357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1859113357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1859113357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1859113357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1859113458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1859113458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1859113458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1859113458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1859113458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1859113458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261268RREKRKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G10130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411711e-134AK241171.1 Oryza sativa Japonica Group cDNA, clone: J065117O05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663145.10.0PREDICTED: transcription activator GLK2-like
TrEMBLJ3N5C70.0J3N5C7_ORYBR; Uncharacterized protein
STRINGOB11G10130.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-32G2-like family protein