PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G26930.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 298aa    MW: 33101.8 Da    PI: 6.8247
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G26930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30137195259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+++Hnh+
  OB10G26930.1 137 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRADPSMLVVTYTSDHNHP 195
                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.696131197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-31132197IPR003657WRKY domain
SuperFamilySSF1182903.01E-26134197IPR003657WRKY domain
SMARTSM007744.2E-37136196IPR003657WRKY domain
PfamPF031068.6E-26138195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MYCDSLFWQS PADQAGDLSD VVRASLLQPG PAAADNSSYL QQQQLIAVSD HEQQQITVPA  60
AACCDLLHAL LPPTLLQQQP SPIQVQVQDQ DVDVEDLFAA HHHHVPPIKR RKSQTKKVVC  120
IPAASGRAGT SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRAD  180
PSMLVVTYTS DHNHPWPTHR NALAGSTRPS SNNSSHRQSQ YSHYDDHHRH HLIINTTTAP  240
MITHLKQEDG EPDSDLFAGV TMDMMTISAS SLLQPEQHQL GALDSNQQLL FHEDYPHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-24112198280Disease resistance protein RRS1
5w3x_D5e-24112198280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G26930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9546101e-123KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662643.10.0PREDICTED: probable WRKY transcription factor 35 isoform X1
TrEMBLJ3N5950.0J3N595_ORYBR; Uncharacterized protein
STRINGOB10G26930.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-58WRKY DNA-binding protein 35