PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB10G26350.1 | ||||||||
Common Name | LOC102719046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 35895.6 Da PI: 5.9137 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.6 | 4.1e-52 | 6 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ + OB10G26350.1 6 LPPGFRFHPTDDELVGYYLKRKVDSLKIEL-EVIPVIDLYKFEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATSTGYWKATGKDRKIAC- 100 79****************************.99**************95334445667************************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + gl+ktLvfykgrap ge+tdWvmheyrl OB10G26350.1 101 -ADVFGLRKTLVFYKGRAPGGERTDWVMHEYRL 132 .779***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-58 | 3 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.1 | 6 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-29 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGTMTLPPGF RFHPTDDELV GYYLKRKVDS LKIELEVIPV IDLYKFEPWE LPEKSFLPKR 60 DLEWFFFCPR DRKYPNGSRT NRATSTGYWK ATGKDRKIAC ADVFGLRKTL VFYKGRAPGG 120 ERTDWVMHEY RLCQDLAHGV SNFIGAYALC RVIKRHEAGL LGEPAAKAKG VVGGGQMSKA 180 SSSSSLVTAD HQLGRGNASP FTPTNASPPL DEMFGGDPFQ LQSCVPYGAG DACVMDLPPL 240 YVPHGQQDPF FSAAGFPPAA ISETQPPFYG DVMGSVSEHE LKWDNLGCSG GSSELCNAAA 300 AGAPLLCRQA SDGDDLTAWF AADDNMSVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-50 | 1 | 159 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-50 | 1 | 159 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-50 | 1 | 159 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-50 | 1 | 159 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-50 | 1 | 159 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-50 | 1 | 159 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-50 | 1 | 159 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-50 | 1 | 159 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-50 | 1 | 159 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-50 | 1 | 159 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-50 | 1 | 159 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-50 | 1 | 159 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-50 | 1 | 159 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-50 | 1 | 159 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB10G26350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833246 | 0.0 | CT833246.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI238F12, full insert sequence. | |||
GenBank | CT833247 | 0.0 | CT833247.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241J15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662089.1 | 0.0 | PREDICTED: NAC domain-containing protein 48-like | ||||
TrEMBL | J3N537 | 0.0 | J3N537_ORYBR; Uncharacterized protein | ||||
STRING | OB10G26350.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 4e-84 | NAC domain containing protein 71 |
Link Out ? help Back to Top | |
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Entrez Gene | 102719046 |