PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G26110.1
Common NameLOC102716251
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family STAT
Protein Properties Length: 705aa    MW: 77793.8 Da    PI: 5.2692
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G26110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT187.21.9e-582303491120
          STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkyp 96 
                   l+vvl++a+g++v kd e+ asL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri+f+++++k+yp
  OB10G26110.1 230 LEVVLVDAFGEAV-KDREIAASLVYADNGALVEKSrDDSEPPLLISCDGLEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIYFSTLDMKRYP 325
                   79**********9.*********************9************************************************************* PP

          STAT  97 fleavskpirCisrsrntrssslt 120
                   flea+skpirCisr+r++r+++++
  OB10G26110.1 326 FLEAYSKPIRCISRNRTNRQLGSV 349
                   ******************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498992.29E-524152IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555502.05E-6601677IPR000980SH2 domain
PROSITE profilePS5000110.078607705IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MAAAAAGCGG GGGYCELRDV RVELDLSKVV GGGDGGEGFA VCFWLYLSSS ARPSSVILHQ  60
MEGGGGGRVP FLALGEGSKL VLFPLLGFHR EAPTPGCSYP WTGITNLAEV NECPLDNWFH  120
VGCEVTEHIM RLHIDGNLVA EAHLCLLYNK PGNQNDLKQI NLLGSEDKLE GYVYNMELSS  180
MLGTIQQQYA ENPPFKLSID YSCCDGIEEG DDGIWNIVGG KASCRRNFIL EVVLVDAFGE  240
AVKDREIAAS LVYADNGALV EKSRDDSEPP LLISCDGLEY PAVSRPLPII RGRALFKLKI  300
SQLSSKCDNK LFRIYFSTLD MKRYPFLEAY SKPIRCISRN RTNRQLGSVK RIGSSLVDEI  360
QSTNNIEGVG HNGKSNGRLQ THDPSSVVCF HPSKFSKIEG DVHKVASENK QARKMMLDKG  420
VQDVMGSDST ASDFDSMDAG SSWSGSDGDE VESFSDAEIF RYCLDSTYER LKFLRSAAPS  480
VNEDDLVKLA NQVSLYSGCA HHRNQILMSK QLLQEGADTW NLISKNNEHA LWSSAVNEIK  540
AKFMDIVHPS NRGLSEQDFE VLRGIAGCGD DIGRDEFDKL WSWLYPVAAA LSKDKINKLW  600
DCTTHRWIEG LITLEEAENA LRSSRELVKR QGTFVLRFPT TRSWPHPDAG SLVVTYVGSD  660
NSIHHKLLSL DVSDARSGNL EDLLLKEPEL SQLSRVDRLP TSMQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G26110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662079.20.0PREDICTED: uncharacterized protein LOC102716251
TrEMBLJ3N5130.0J3N513_ORYBR; Uncharacterized protein
STRINGOB10G26110.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-152SH2 domain protein B