PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G25700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 260aa    MW: 28887.6 Da    PI: 6.549
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G25700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.6e-1695139347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+++++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky
     OB10G25700.1  95 PWTEEEHKKFLDGLRQLGKGDWRGISKNFVTTRTATQVASHAQKY 139
                      7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.53988144IPR017930Myb domain
SuperFamilySSF466898.61E-1889143IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1891143IPR006447Myb domain, plants
SMARTSM007179.9E-1192142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-1293139IPR009057Homeodomain-like
CDDcd001671.90E-1095140No hitNo description
PfamPF002495.2E-1395139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEKQEEVAAA GMRPPVMFRL FGVEVRGGVD EEEYDDEGVE DGFLKKSSSM PNLTSIDPLL  60
PADGGKRRAS DDSELASGQQ KRRRRKVQER KKGIPWTEEE HKKFLDGLRQ LGKGDWRGIS  120
KNFVTTRTAT QVASHAQKYF LRQINPGKKK RRASLFDVVS EYNDDQLPSP QSVGTKPAPT  180
QEIIHTDRGD VLIPSYPVAR GFRGDSVQVD ELTEYVERSK AVEEMSLSMV SGLEMASSSI  240
SSLELSIAPP HGAIEAIKVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16585KRRASDDSELASGQQKRRRRK
28085KRRRRK
38091KRRRRKVQERKK
48191RRRRKVQERKK
5147151KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G25700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2889860.0AK288986.1 Oryza sativa Japonica Group cDNA, clone: J090086G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662604.21e-179PREDICTED: transcription factor DIVARICATA-like
SwissprotB8BI931e-134MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC511e-134MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLJ3N4X20.0J3N4X2_ORYBR; Uncharacterized protein
STRINGOB10G25700.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-31MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]