PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB10G25700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 260aa MW: 28887.6 Da PI: 6.549 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.6e-16 | 95 | 139 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky OB10G25700.1 95 PWTEEEHKKFLDGLRQLGKGDWRGISKNFVTTRTATQVASHAQKY 139 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.539 | 88 | 144 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-18 | 89 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-18 | 91 | 143 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.9E-11 | 92 | 142 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-12 | 93 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.90E-10 | 95 | 140 | No hit | No description |
Pfam | PF00249 | 5.2E-13 | 95 | 139 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEKQEEVAAA GMRPPVMFRL FGVEVRGGVD EEEYDDEGVE DGFLKKSSSM PNLTSIDPLL 60 PADGGKRRAS DDSELASGQQ KRRRRKVQER KKGIPWTEEE HKKFLDGLRQ LGKGDWRGIS 120 KNFVTTRTAT QVASHAQKYF LRQINPGKKK RRASLFDVVS EYNDDQLPSP QSVGTKPAPT 180 QEIIHTDRGD VLIPSYPVAR GFRGDSVQVD ELTEYVERSK AVEEMSLSMV SGLEMASSSI 240 SSLELSIAPP HGAIEAIKVL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 85 | KRRASDDSELASGQQKRRRRK |
2 | 80 | 85 | KRRRRK |
3 | 80 | 91 | KRRRRKVQERKK |
4 | 81 | 91 | RRRRKVQERKK |
5 | 147 | 151 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}. | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB10G25700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288986 | 0.0 | AK288986.1 Oryza sativa Japonica Group cDNA, clone: J090086G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662604.2 | 1e-179 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | B8BI93 | 1e-134 | MYBS2_ORYSI; Transcription factor MYBS2 | ||||
Swissprot | Q7XC51 | 1e-134 | MYBS2_ORYSJ; Transcription factor MYBS2 | ||||
TrEMBL | J3N4X2 | 0.0 | J3N4X2_ORYBR; Uncharacterized protein | ||||
STRING | OB10G25700.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10464 | 30 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 2e-31 | MYB_related family protein |
Publications ? help Back to Top | |||
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