PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G21860.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 300aa    MW: 32591.8 Da    PI: 7.8223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G21860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.6e-13351148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd+l+++  +++G g +W + +  +g+ R++ +c+srw++yl
     OB10G21860.1  3 KGKWSKEEDDLIKNHMEKYGIGrSWQALSDALGLQRCGRSCRSRWLNYL 51
                     79******************999************************97 PP
2Myb_DNA-binding36.61e-1158101247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g++T+ E+ ++ + +++ G+  W++Ia+ ++ gRt+  +k++w++ 
     OB10G21860.1  58 GNFTPAEERIICKMHRKRGSS-WSAIAAQLP-GRTDLAVKNYWNST 101
                      89*****************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.832151IPR017930Myb domain
SMARTSM007172.4E-10253IPR001005SANT/Myb domain
SuperFamilySSF466893.48E-25298IPR009057Homeodomain-like
PfamPF002496.4E-12351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-20458IPR009057Homeodomain-like
CDDcd001673.11E-9551No hitNo description
PROSITE profilePS5129420.26452106IPR017930Myb domain
SMARTSM007174.9E-1156104IPR001005SANT/Myb domain
PfamPF002491.1E-1058101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2159105IPR009057Homeodomain-like
CDDcd001671.96E-859102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MKKGKWSKEE DDLIKNHMEK YGIGRSWQAL SDALGLQRCG RSCRSRWLNY LRPGLKHGNF  60
TPAEERIICK MHRKRGSSWS AIAAQLPGRT DLAVKNYWNS TLKKRFPAAA RSATLAARRR  120
HRPAARTSAS SDDDDDGATP PGLALVVYSE GITAPAPAVA GADDELAPYS ASSPTQAKRP  180
EHPAITGAAE QEEQPIAAVP ISTFAATSVL PTPPRSDRAG GEVTIPCFPF SPLPFIEPDL  240
PELAWTAGLD DIPAFDDASA AACCYPKRPF PTPPDSPRPA KLPFIAGFDD VQSFWSWLDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-25110625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G21860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798882e-50AC079888.10 Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence.
GenBankAP0149662e-50AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-50CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876753.18e-90transcription factor MYB30-like
TrEMBLJ3N3T80.0J3N3T8_ORYBR; Uncharacterized protein
STRINGOB10G21860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.16e-41myb domain protein 87