PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G20590.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 664aa    MW: 72619.8 Da    PI: 6.8377
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G20590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.5e-2397198199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++ +
  OB10G20590.1  97 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTRLG 189
                   89****************************996555555..8999*********************************************..44789 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   el+v+++r+
  OB10G20590.1 190 ELCVGIRRA 198
                   99****996 PP
2Auxin_resp117.11.5e-38255337283
    Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   a  a+++++Fev Y+Prast+eFvvk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+
  OB10G20590.1 255 AGLAANGQPFEVAYYPRASTPEFVVKAASVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 337
                   66799****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-3688200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-2893200IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-2196197No hitNo description
PfamPF023623.5E-2197198IPR003340B3 DNA binding domain
SMARTSM010191.5E-2197199IPR003340B3 DNA binding domain
PROSITE profilePS5086312.61997199IPR003340B3 DNA binding domain
PfamPF065072.0E-33254337IPR010525Auxin response factor
PROSITE profilePS5174518.38569647IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MKEVGEEDRC LDPQLWHACA GGMVQMPAVR SRVYYFPALV LCCVEGVQFL ADPESDEVYA  60
KIRLAPVGPG EVEFQEPEEL CPLGGDPSEP PEKPTSFAKT LTQSDANNGG GFSVPRYCAE  120
TIFPKLDYRA DPPVQTVLAK DVHGEVWKFR HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS  180
IVFLRTRLGE LCVGIRRAKR VACGGMECMS GWNAPGYGGF SAFLKEEESK MMKSPGGGYM  240
RGRGKVRIAD VAEAAGLAAN GQPFEVAYYP RASTPEFVVK AASVQAAMRI QWCSGMRFKM  300
AFETEDSSRI SWFMGTISSV QVADPNRWPN SPWRLLQVSW DEPDLLQNVK CVSPWLVELV  360
SSIPPIHLGP FSSPRKKLRV PPHPDFPFEG HLLNPIFHGN PLGPSNSPLC CYPDNAPAGI  420
QGARHAQFGL PITDHQLNKL HLGLFHGGSF NRLDAIALPS RISKGFMVSS APAHDNVSCL  480
LSIGTPQTTE KCDDRKTTSH IMLFGKAIFT EQQITSSGSM ETLSPGVTGN SSPTGNEQKA  540
GNASDGSGSS ICVGFLSQGH EASDLGLEAG HCKVFLESED VGRTIDLSVL RSYEELYGQL  600
ADMFGIEKQE IISHLHYRDA AGVVKHTGEV PFSHFMKVAR RLTIIAGDKG RIERPLIECL  660
VEQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-72336243392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G20590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3186170.0AK318617.1 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661866.20.0PREDICTED: auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLJ3N3G10.0J3N3G1_ORYBR; Auxin response factor
STRINGOB10G20590.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]