PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G18880.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 299aa    MW: 33542.8 Da    PI: 10.5212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G18880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07204250448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                      WT  E  +lv+++ ++G  +W++  r       Rt+ ++k++w+++l
     OB10G18880.1 204 WTLNEVAKLVKGISKYGVSRWTKLKRDYFpeSLRTAVHLKDKWRNLL 250
                      *************************98777*88************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.7196250IPR017877Myb-like domain
SuperFamilySSF466893.81E-13198252IPR009057Homeodomain-like
SMARTSM007175.8E-5200252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10203251IPR009057Homeodomain-like
CDDcd116605.41E-18204251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEEEEGREGH VAVFVVSWRP PRSSPATAEL ILLPLSPSRG CHRAHPTAAR EEGAVCGGGE  60
REALVGGKVE QPADTLGPPK NTCNVGSDLK AVNPLWTTGP LVEMEDIFYP AHEPDILQLL  120
HGPRDERDLS KCLAGEACSL TMRDHVTVQA SPDPILNLLD FIPKDGRRCG MRRARKRKIF  180
PLKSLCSKPA RGKRHCQRKN NAHWTLNEVA KLVKGISKYG VSRWTKLKRD YFPESLRTAV  240
HLKDKWRNLL KACGINITSR KKGKTQKTML RPLDTRLIEQ IKQVNRAISN HALRKSRDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166176RRCGMRRARKR
2171177RRARKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G18880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697004.11e-130PREDICTED: uncharacterized protein LOC102701027
TrEMBLJ3N2Z00.0J3N2Z0_ORYBR; Uncharacterized protein
STRINGOB10G18880.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-15TRF-like 6