PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G18700.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 334aa    MW: 36238.2 Da    PI: 6.6388
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G18700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.83.3e-2780167371
       E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse......................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                   +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                      d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  OB10G18700.1  80 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnsssfvspdpdntnaqpfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 167
                   689*******...*****999*************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.0E-1226334IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.6E-4474173IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.3E-3478167IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.35E-2081168IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.6E-2481167IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144588.81E-40172275IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.33E-40174298No hitNo description
SMARTSM011382.1E-71174332IPR014889Transcription factor DP, C-terminal
PfamPF087811.5E-40175304IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAGSAAHSAS TSGGGGGSEG GXXXXXXXXX XXXXXXXXTV ARRLDGLDIQ GDDAPSSQAT  60
TSKKKKRGPG TRATGPEKGG RGLRQFSMKV CEKVESKGRT TYNEVADELV AEFADPNSSS  120
FVSPDPDNTN AQPFDEKNIR RRVYDALNVL MAMDIISKDK KEIQWKGLPR TSMNDVDDLK  180
AQIFGLKGRI DKKNAYLQEL QDQFVGLQNL AQRNEQLYGS GNAPSGGVAL PFILVQTRPH  240
ATVEVEISED MQLVHFDFNS TPFELHDDSF VLKALGFSGK EPNGAEDQVA NGGECSSTPN  300
IYHQSPQVAR PNGVRLPTSP PIPGILKGRV KHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3372172193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G18700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245510.0AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614876.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-125DPB_ARATH; Transcription factor-like protein DPB
TrEMBLJ3N2X20.0J3N2X2_ORYBR; Uncharacterized protein
STRINGOB10G18700.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-127Transcription factor DP