PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G18020.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 526aa    MW: 60395.3 Da    PI: 4.7142
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G18020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.21.2e-332113022102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++e+++++ ++sws+ gnsfvv+d++ fa+ +Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++ik
  OB10G18020.1 211 FLTKTYDLVEEASTDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKTIK 298
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  OB10G18020.1 299 RRKP 302
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.105.0E-903180IPR014710RmlC-like jelly roll fold
HamapMF_0315437.3213176IPR0274961,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, eukaryotes
SuperFamilySSF511824.46E-5214181IPR011051RmlC-like cupin domain
PfamPF030796.3E-6415168IPR004313Acireductone dioxygenase ARD family
Gene3DG3DSA:1.10.10.103.3E-37207300IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-60207300IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-34207300IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-18211234IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-30211300IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18249261IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340250274IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18262274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019509Biological ProcessL-methionine biosynthetic process from methylthioadenosine
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010309Molecular Functionacireductone dioxygenase [iron(II)-requiring] activity
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MENEFQDGKT EVIEAWYMDD SEEDQRLPHH REPKEFIPIE KLTELGVISW RLNPDNWEND  60
ENLRRIREAR GYSYVDICDV CPEKLPNYET KIKNFFEEHL HTDEEIRYCL EGSGYFDVRD  120
QNDQWIRIAV KKGGMIVLPA GMYHRFTLDT DNYIKAMRLF VGDPVWTPYN RPHDHLPERG  180
GVLGWEGHGP DGGGGGGGGH CEGGGGGPPP FLTKTYDLVE EASTDGVVSW SRAGNSFVVW  240
DPHVFADLLL PRLFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ RHLLKTIKRR  300
KPPSNAPSSQ QQSLTSCLEV GEFGFEEEID RLKRDKNILI TEVVKLRQEQ QATKDHVKAM  360
EDRLRAAEQK QVQMMGFLAR AMRNPEFFQQ LAQQKEKRKE LEDAISKKRR RPIDNVPFYS  420
PGETSQAEQL DSSYLFDSGV LNEFSEPGIP ELENLAVNIQ DLGKDRVDGE RQYEANGQAE  480
LGDDFWADLL VEDFGSKEEQ SELEAKIEGI DELAQQLGYL SSTSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vr3_A2e-741217913180Acireductone dioxygenase
5i8s_A2e-741217911681,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i8t_A2e-741217911681,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i8y_A2e-741217911681,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i91_A2e-741217911681,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i93_A2e-741217911681,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293299LKTIKRR
2396410KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G18020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444880.0AY344488.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661780.20.0PREDICTED: heat stress transcription factor A-2c-like
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLJ3N2Q40.0J3N2Q4_ORYBR; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
STRINGOB10G18020.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP285522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-101heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]