PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G17690.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 289aa    MW: 31885.5 Da    PI: 6.5114
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G17690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.64.9e-23211492126
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeek..ew.yfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                   ++Gf+F P d +l+ + L  k++g    +++++ +++v+i++++P +L  +++ae++   + yfFs+r+ + a++k++ ra+k g Wk  g+ k++ 
  OB10G17690.1  21 ARGFHFVPDDLDLL-DILDDKLRGLLtDPAHDAvFHDVRILDFHPATLY-EMYAEDEvdGCiYFFSRREFRRAKKKKTMRAAKYGQWKVFGSCKTIG 115
                   57************.88****9998753344444**************7.344444434446*********************************97 PP

           NAM  94 skkgelvglkktLvfy....kgrapkgektdWvmhey 126
                   +    +vg + tL fy    + +++++++t+W+mhe+
  OB10G17690.1 116 A---VAVGRRYTLEFYerrfDSSNNHSVRTNWCMHEF 149
                   7...89**********655546788889********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-2915170IPR003441NAC domain
PROSITE profilePS5100526.4220170IPR003441NAC domain
PfamPF023651.5E-1222149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAAPEDGEDG KRKWANKHGI ARGFHFVPDD LDLLDILDDK LRGLLTDPAH DAVFHDVRIL  60
DFHPATLYEM YAEDEVDGCI YFFSRREFRR AKKKKTMRAA KYGQWKVFGS CKTIGAVAVG  120
RRYTLEFYER RFDSSNNHSV RTNWCMHEFL RIIGPENEVS GLAVYRLYNK MATTIGEEKA  180
EDNPVDCAKN MNHHGQASAA GMAVPPSAAS TLGHKGKRKS EASASMTSTD HARSTNTSAP  240
PSADYQPPPP PPSLQGTENI SGSGDVVGHE DDWEQVSVAE ADNAGAARG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G17690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696994.10.0PREDICTED: NAC domain-containing protein 72-like
TrEMBLJ3N2M10.0J3N2M1_ORYBR; Uncharacterized protein
STRINGOB10G17690.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367