PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G16130.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1078aa    MW: 120516 Da    PI: 5.9548
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G16130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.34.5e-56801972118
          CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                   lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++fqrr
  OB10G16130.1  80 LKEaQQRWLRPAEICEILKNYRSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENFQRR 176
                   45559******************************************************************************************** PP

          CG-1  98 cywlLeeelekivlvhylevk 118
                   +yw+Lee++ +ivlvhyle+k
  OB10G16130.1 177 TYWMLEEDFMHIVLVHYLETK 197
                   ******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.90176202IPR005559CG-1 DNA-binding domain
SMARTSM010765.0E-7779197IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4982195IPR005559CG-1 DNA-binding domain
PfamPF018338.7E-8498577IPR002909IPT domain
SuperFamilySSF812961.18E-17498585IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.107.2E-6498584IPR013783Immunoglobulin-like fold
SuperFamilySSF484034.51E-15691794IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-15694796IPR020683Ankyrin repeat-containing domain
CDDcd002049.55E-11694792No hitNo description
PROSITE profilePS5029715.22700794IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736733765IPR002110Ankyrin repeat
SuperFamilySSF525401.12E-7893946IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.73895917IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876896925IPR000048IQ motif, EF-hand binding site
PfamPF006120.042898916IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022918940IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56919943IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4921940IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1078 aa     Download sequence    Send to blast
MAATESSTLR SSETMSMEMR SDRSCNDSES RSEDVAAVEP EAEGLDGMRW RRRLTGRARH  60
DDEGGKKKIR WKEGNIAQIL KEAQQRWLRP AEICEILKNY RSFRIAPEPP NRPQSGSLFL  120
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE RLKSGSIDVL HCYYAHGEEN ENFQRRTYWM  180
LEEDFMHIVL VHYLETKGGK SRTRGHNDML QAAAMDSPLS QLPSQTIEGE SSVSGQFSEY  240
EEAESDIYSG GAGYNSFTQM QHQQNGIGPV IDASMFSSHV PASSIGNYQG QHAMGDTASF  300
FSSTQHDSPL VFRDPNLEHA TNGNELSWNG VMKPDEGAVQ MSHLQNTVQP EQFTQGPGVE  360
YLTFDEVYSD GLSLKDIGAA GADVEPFWQF SGATGDISAT QNSIQQNDGS LEAAIGYPFL  420
KTQSSNLSDI LKDSFKKSDS FTRWMSKELL EVEDSQIQSS SGAYWNTEEA DSIIEASSRE  480
PLDQFTVAPM VLQDQLFTIV DFLPSWTYAG SKTKVLVTGR FLHANQVTER HKWSCMFGEV  540
EIPADISADG SLRCYSPPHK PGRVPFYVTC SNRLACSEVR EFEFRPSDSQ YMDAPSPLGA  600
TNKVYFQIRL DNLLSLEPHD YQATITNPSK EMIDLSKKIS SLLANNDEWS KLLKLADDNE  660
LLTDDQQDQY AEKLIKEKLH VWLLHKVGDG GKGPSVLDDE GLGVLHLAAA LGYGWAIRPT  720
VTAGVNINFR DFHGWTALHW AAFCGRERTV VALIALGAAP GALTDPHPNY PAESTPADLA  780
SANGHKGISG FLAESSLTSH LQALNLKEAN MSEISGLPGI VDITERSASQ PAIGDSLGAV  840
RNAAQAAALI YQVFRVQSFQ RKQAIQYEGD KGGISDEHAL SLVSMKASKP GQLDPLNAAA  900
SRIQNKYRGW KGRKEFLLIR QRIVKIQAHV RGHQVRKHYR KIVWSVGIVE KVILRWRRRR  960
AGLRGFRPTE GAIESSSGGT SSSLVADKPA GDDYDFLQEG RKQTEERLQK ALARVKSMVQ  1020
YPEARDQYQR ILNVVSKMQE SQIVQEKILD DSAEMDEGNF MSEFKELWDD DTPLPDYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G16130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1014790.0AK101479.1 Oryza sativa Japonica Group cDNA clone:J033041A20, full insert sequence.
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662301.10.0PREDICTED: calmodulin-binding transcription activator 3-like
TrEMBLJ3N2650.0J3N265_ORYBR; Uncharacterized protein
STRINGOB10G16130.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains