PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB10G16010.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 1053aa MW: 118644 Da PI: 8.937

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB10G16010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.7e-14	31	75	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll ++ k+ ++W++Iar m+ +R++ +c++rw+ +l OB10G16010.1 31 AWTPEEDALLQRLAKENRFRRWSRIARSMP-RRSARSCRDRWRHHL 75 7***************************.*********9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.2E-12	28	77	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.776	30	79	IPR017930	Myb domain
SuperFamily	SSF46689	8.03E-19	30	118	IPR009057	Homeodomain-like
CDD	cd00167	1.42E-12	31	75	No hit	No description
Pfam	PF00249	8.0E-13	31	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-15	31	83	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.806	77	122	IPR017877	Myb-like domain
SMART	SM00717	6.1	78	124	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-5	85	122	IPR009057	Homeodomain-like
SuperFamily	SSF54001	1.02E-16	741	923	No hit	No description
Gene3D	G3DSA:3.30.310.130	5.1E-7	824	879	No hit	No description
Pfam	PF02902	1.6E-11	825	922	IPR003653	Ulp1 protease family, C-terminal catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0008234	Molecular Function	cysteine-type peptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 1053 aa Download sequence Send to blast
MDREVNMASS PPAPASVPRP RLIVRLRLPP AWTPEEDALL QRLAKENRFR RWSRIARSMP 60 RRSARSCRDR WRHHLTRDLY HRPDDDELLR LHRRLGDCWK EIGRAVYGRT SRVMRRRWKE 120 LRRSGFVASA AAAAAARKEE PAGAEDADDE MVESDKESSS EPESQGRLGL TNALASSFAS 180 CSLRDDQTIV GSLELGFLAY RFPPHNSNVM CLFVFTRGGM AALSDESDFV SVIQRGSRCS 240 RRFTKPNHNP GEKVSNVGCS KKSGYGPKGV GVKRKAPNDA QTVASSSKKA AIKFIASKSN 300 KSVEKVGHNI GYRCSARYIP QMIARLSKNQ KLFLVNNGFG HLVSMKDCEF PKYLTMWLIN 360 SVNCSTETLH VCGKKIGIRP LVQKVLGIPN GDLPVQLAKD VDTRVIFMDF VVVIGALGGI 420 PRISFVTTKD LEDVKSLVIK ASSTKPDYSS LKLKDYSETV YAQNNRAGTS SEHISHHTDD 480 VSKETCFHVR MQDEQVEAIL DKTDAQIISD FHKEFMKNRG ACNSSRRSMG IQVKEEVSQQ 540 EEDVPQEEGV PQQGKEQILG DKTNVMDEVN IVAEVGQVAG DGLSNKIPED ELSNGFAHIT 600 FQDCIKETDI DKDGTKQEDT CAKINTIKDD DESSIATNVV FTQDEFFDTL GTCVLFDVLH 660 IFLLQPLRDP TPIVIEDSSQ DSRSSRVQVP PLIEPITNGE RFPDPATLPK ASKVRPTRGK 720 RSHTSMEAVA ELSKKAKVSD PFITKNWHQQ VLCTFEGDES AIKVQICGTY VTEEEFMPAL 780 KYSSEISNNF MWLCCNAMMT NWDTKTKIIV NPVVVDQLIL PIEKCNIAKV RSSFAKYDLD 840 KTERIYLPIL TSGHWFLIII NVSNEVVQIY DSLRNPTKIE ADHKALWDNM SSNLVLAIDN 900 YRDKPFGFCD IFKVQYVGSP QQGLRYRHPL DDSDQVRIRK LARHDSEGYS SRDVWGPALK 960 CTRVRKTAGV VVPKKLLILP FVPLGSISNY LGVFGSLYKR FSRAIKARTP TLLNSRLKRY 1020 TKPRHLEHSL LGLLVYMFDK LFHSCIYIFM FVP

Sequence ? help Back to Top

Protein Sequence Length: 1053 aa Download sequence Send to blast

MDREVNMASS PPAPASVPRP RLIVRLRLPP AWTPEEDALL QRLAKENRFR RWSRIARSMP  60
RRSARSCRDR WRHHLTRDLY HRPDDDELLR LHRRLGDCWK EIGRAVYGRT SRVMRRRWKE  120
LRRSGFVASA AAAAAARKEE PAGAEDADDE MVESDKESSS EPESQGRLGL TNALASSFAS  180
CSLRDDQTIV GSLELGFLAY RFPPHNSNVM CLFVFTRGGM AALSDESDFV SVIQRGSRCS  240
RRFTKPNHNP GEKVSNVGCS KKSGYGPKGV GVKRKAPNDA QTVASSSKKA AIKFIASKSN  300
KSVEKVGHNI GYRCSARYIP QMIARLSKNQ KLFLVNNGFG HLVSMKDCEF PKYLTMWLIN  360
SVNCSTETLH VCGKKIGIRP LVQKVLGIPN GDLPVQLAKD VDTRVIFMDF VVVIGALGGI  420
PRISFVTTKD LEDVKSLVIK ASSTKPDYSS LKLKDYSETV YAQNNRAGTS SEHISHHTDD  480
VSKETCFHVR MQDEQVEAIL DKTDAQIISD FHKEFMKNRG ACNSSRRSMG IQVKEEVSQQ  540
EEDVPQEEGV PQQGKEQILG DKTNVMDEVN IVAEVGQVAG DGLSNKIPED ELSNGFAHIT  600
FQDCIKETDI DKDGTKQEDT CAKINTIKDD DESSIATNVV FTQDEFFDTL GTCVLFDVLH  660
IFLLQPLRDP TPIVIEDSSQ DSRSSRVQVP PLIEPITNGE RFPDPATLPK ASKVRPTRGK  720
RSHTSMEAVA ELSKKAKVSD PFITKNWHQQ VLCTFEGDES AIKVQICGTY VTEEEFMPAL  780
KYSSEISNNF MWLCCNAMMT NWDTKTKIIV NPVVVDQLIL PIEKCNIAKV RSSFAKYDLD  840
KTERIYLPIL TSGHWFLIII NVSNEVVQIY DSLRNPTKIE ADHKALWDNM SSNLVLAIDN  900
YRDKPFGFCD IFKVQYVGSP QQGLRYRHPL DDSDQVRIRK LARHDSEGYS SRDVWGPALK  960
CTRVRKTAGV VVPKKLLILP FVPLGSISNY LGVFGSLYKR FSRAIKARTP TLLNSRLKRY  1020
TKPRHLEHSL LGLLVYMFDK LFHSCIYIFM FVP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB10G16010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	J3N253	0.0	J3N253_ORYBR; Uncharacterized protein
STRING	OB10G16010.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12569	20	35