PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G15590.1
Common NameLOC102722147
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 393aa    MW: 44024.1 Da    PI: 4.771
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G15590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.11.6e-142012810128
           NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkkt 105
                   +dee v ++L+++ ++++l++ +v+  v  + ++Pwd +       + wy  Fs  +++ ++g+++  + k+gyWk   +  ++ + +++ vg+k  
  OB10G15590.1  20 SDEERV-RFLAERKAEHSLPE-NVMVGVSFHLFDPWDSE-------NLWYMnFSDDQQSPKNGENAIIKSKTGYWKIVDT-VRIPT-STAIVGMKVR 105
                   688988.88998888899898.89************975.......6798625555555556777777999*****8766.45555.6899****** PP

           NAM 106 LvfykgrapkgektdWvmheyrl 128
                   L  y+g+ap+g++t Wvm+ey +
  OB10G15590.1 106 LDHYEGEAPSGKRTGWVMNEYLV 128
                   *********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.75611149IPR003441NAC domain
SuperFamilySSF1019411.27E-2218149IPR003441NAC domain
PfamPF023651.5E-620126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSPSVPGLPL LNISISSSWS DEERVRFLAE RKAEHSLPEN VMVGVSFHLF DPWDSENLWY  60
MNFSDDQQSP KNGENAIIKS KTGYWKIVDT VRIPTSTAIV GMKVRLDHYE GEAPSGKRTG  120
WVMNEYLVEE NDEANLPQDY KNLCTIYFQE DKKLDAGNKQ ICLSANARND RNESYLQYLA  180
ELEEQNAASN PQAVSVNEEN VSSSKGLDRQ KTNASDDQSV NYAPSSEGYI ELNDLLSTDA  240
SASSSEYSSR RTMISEEDEY FDSDAFLREI RNDHNTDNEE HADSKFSVTV PSKSDHVVIS  300
PPEQGFVDNL DNHAIRAGDS PQKSMQSGKA DQHSIEEHPQ NIPTPSCFPI GHVKRSRSSS  360
SSSSQGTSRS PQRERSTKKF GKLGKKYCCF GSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G15590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697473.10.0PREDICTED: NAC domain-containing protein 83-like isoform X2
TrEMBLJ3N2110.0J3N211_ORYBR; Uncharacterized protein
STRINGOB10G15590.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-14NAC family protein