PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB10G15200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 214aa MW: 24047.4 Da PI: 5.2309 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.8 | 2e-31 | 11 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 lp Gf+F+Ptd++lvv+yL+++v g+++ + ++ +d+ ++Pw++p + ++k+wyfF+k+d+ + r++ sg Wk+tg++k+++++ OB10G15200.1 11 LPLGFKFQPTDQQLVVDYLQRRVVGESCII-PTVVGLDMEGFDPWHIPGMPLYGDKKWYFFIKTDHVDR---TCVRMAPSGSWKTTGTNKTIFVTga 103 699************************888.66999************65556899********99876...46788899*************9866 PP NAM 96 kgelvglkktLvfykg.rapkgektdWvmheyrl 128 +g + +k+ +vfy g + +++kt+W+mhey l OB10G15200.1 104 QGVPTAVKRAFVFYLGqPSLETNKTSWIMHEYCL 137 67779*********883456889*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-39 | 4 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.483 | 11 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-20 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAMMPQLTLT LPLGFKFQPT DQQLVVDYLQ RRVVGESCII PTVVGLDMEG FDPWHIPGMP 60 LYGDKKWYFF IKTDHVDRTC VRMAPSGSWK TTGTNKTIFV TGAQGVPTAV KRAFVFYLGQ 120 PSLETNKTSW IMHEYCLTNP STEEIVLCKI SNKNQHELRA GLYDVAYNLI IHFEPLAMEH 180 PNHVSGIDAT AATDDLGDLD EENVSNNTTT TNNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-32 | 5 | 154 | 11 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-32 | 5 | 154 | 11 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-32 | 5 | 154 | 11 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-32 | 5 | 154 | 11 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-32 | 5 | 154 | 11 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-32 | 5 | 154 | 11 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB10G15200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625739.1 | 1e-58 | NAC domain-containing protein 48-like | ||||
TrEMBL | J3N1X2 | 1e-161 | J3N1X2_ORYBR; Uncharacterized protein | ||||
STRING | OB10G15200.1 | 1e-161 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16540 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-34 | NAC family protein |